PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01317.1.g00150.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 435aa    MW: 46126.6 Da    PI: 10.3834
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01317.1.g00150.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.44.9e-20112163156
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                   ++y+GVr ++ +gr++AeIrdp    k+ r++lg+f+taeeAa+a++ a+++++g+
  Zpz_sc01317.1.g00150.1.am.mk 112 PHYRGVRKRP-WGRFAAEIRDPA---KKSRVWLGTFDTAEEAARAYDVAAREYRGA 163
                                   68********.**********83...36**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.6E-14112162IPR001471AP2/ERF domain
CDDcd000181.22E-28112170No hitNo description
SuperFamilySSF541711.31E-22113171IPR016177DNA-binding domain
SMARTSM003803.8E-37113176IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-32113170IPR001471AP2/ERF domain
PROSITE profilePS5103224.474113170IPR001471AP2/ERF domain
PRINTSPR003674.8E-11114125IPR001471AP2/ERF domain
PRINTSPR003674.8E-11136152IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
METAPDAAQF AAPQGGGAEK ARRRILMPPR KRRGAAARTV KALPDCAALY SLLPLHHHHP  60
LALASSYLGA THTHAPFAHE RKNTAMVPRT SEKTTQPASG LALGVGCGAG GPHYRGVRKR  120
PWGRFAAEIR DPAKKSRVWL GTFDTAEEAA RAYDVAAREY RGAKAKTNFP FTSTTSPTPP  180
VALAAMGVTG GGGSRSSNSS TVESFGGDVQ APMQAMPLPT SLELDLFSRG AGAVRFPFSS  240
YPVSQPYFFY GQAAAAHMLK LAPTVTVAAV AQSDSDSSSV VDLAPSPLAQ RTVTFDLDLN  300
CPPPMEAYTA LPVEEEAASL SVSRVYRKSC VAAVPPENIS RRAFSSRFPG AAVSNCAEEK  360
IMARATCAPG CVSPRRRARC APERSCEYEP GGGVVRWGAW IFRSRRCART ARSSLAVRAP  420
GSFRLGLPLV ISGVT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-22109171164ATERF1
3gcc_A6e-22109171164ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00542DAPTransfer from AT5G44210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01317.1.g00150.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001146973.13e-71uncharacterized LOC100280582
TrEMBLA0A0A9U7H81e-88A0A0A9U7H8_ARUDO; Uncharacterized protein
STRINGGRMZM2G174347_P011e-70(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38463174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.16e-18erf domain protein 9