PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01317.1.g00140.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 621aa    MW: 67749.4 Da    PI: 12.1193
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01317.1.g00140.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.8e-18475524255
                           AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   +y+GVr ++ +gr++AeIrd +     r +r++lg+++t+ eAa a+++a+ +l+g
  Zpz_sc01317.1.g00140.1.am.mk 475 HYRGVRKRP-WGRYAAEIRDpW-----RkTRVWLGTYDTPVEAALAYDRAAVALRG 524
                                   7********.**********88.....45***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.43475532IPR001471AP2/ERF domain
CDDcd000182.96E-24475531No hitNo description
PfamPF008471.3E-11475524IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-20475532IPR016177DNA-binding domain
SMARTSM003802.0E-31475538IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-28475532IPR001471AP2/ERF domain
PRINTSPR003677.3E-9476487IPR001471AP2/ERF domain
PRINTSPR003677.3E-9498514IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MALGSAARRP VSSPRERKAP PAPTRHHWPS GAVKKAPRRD ALFSAPNTVS GHVRAGPACA  60
PVAATPHLCS PPHTTTCDRA APVASPRRSA LALVRRRGLV PYGRGDPSLV HAIEPVPTSS  120
HTIGPRRSRP CLGPVAAFAA PATRKRSRSL SRRMWQARRA AKRSPRPLRR VRRCLTQQEG  180
GMAVKARAFP RPLPSCARGR PPCRFPKIFL AINAVGRRDL DGSAGYPPHS LAAWCRLPAW  240
LRMKRHTHHP CPCAVLDSSW RRLGVPASID RRRGTRVRLP ANALLPTSRQ APSREPRRTE  300
SCSGTSPRRF SPAGPGRQRT GLGAPFRRAC RRHGTARVTG RGVSSVLCFS CLLLRAVGLA  360
SHGARRTPAR SLVSVRRDHS LERAWSRKAS NRAAPGQIHD AVRAPAAEYI STHALPRPPG  420
SESCPTNLRG DISREDRMEW HIIGGHHRGR DSGAAVGDAG GEEGGEQPQP LRGEHYRGVR  480
KRPWGRYAAE IRDPWRKTRV WLGTYDTPVE AALAYDRAAV ALRGFKARTN FGSASGGNCR  540
HPPRPAAPHP VQAFGGLDIG QPSPWHFVYL PSRLHQAMET PEQDFDEDVA ASLPSTALEL  600
RTGPRSLPFD LNEPPSLLFG S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-18472531262ATERF1
3gcc_A1e-18472531262ATERF1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00645PBMTransfer from LOC_Os05g41760Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01317.1.g00140.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1085233e-69AC108523.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1118_C04, complete sequence.
GenBankAK2423933e-69AK242393.1 Oryza sativa Japonica Group cDNA, clone: J080064G22, full insert sequence.
GenBankAP0149613e-69AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126133e-69CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
GenBankCT8288803e-69CT828880.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN038E23, full insert sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.14e-21ERF domain protein 12