PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc01271.1.g00160.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 145aa MW: 16109.1 Da PI: 6.2551 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60 | 5.5e-19 | 7 | 54 | 4 | 55 |
AP2 4 kGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +GVr+++ +g+W+AeIrdp + +r +lg+f+taeeAa+a++ a+ +++g Zpz_sc01271.1.g00160.1.sm.mk 7 TGVRRRP-WGKWAAEIRDP-----HraARKWLGTFDTAEEAARAYDVAAVEFRG 54 6******.**********7.....338***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 24.078 | 5 | 62 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-9 | 6 | 17 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.14E-22 | 7 | 63 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.7E-12 | 7 | 54 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.7E-31 | 8 | 68 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.68E-27 | 8 | 64 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.1E-29 | 8 | 63 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-9 | 28 | 44 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence Send to blast |
MCVARSTGVR RRPWGKWAAE IRDPHRAARK WLGTFDTAEE AARAYDVAAV EFRGQRAKLN 60 FPADAAAVSA YSSWATVQVS QQPVPQSLHE YCGLTAASPV HMAQAPAAQL WQQQGGRPAA 120 KDREEIWDGL DEILMLEDDS FWSIP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-20 | 4 | 62 | 13 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc01271.1.g00160.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU973058 | 7e-70 | EU973058.1 Zea mays clone 392659 ethylene-responsive element binding protein 2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004954022.1 | 2e-52 | ethylene-responsive transcription factor ERF112 | ||||
TrEMBL | A0A3L6QHJ5 | 2e-51 | A0A3L6QHJ5_PANMI; Uncharacterized protein | ||||
STRING | Pavir.J32690.1.p | 2e-53 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1242 | 36 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50080.1 | 3e-21 | ethylene response factor 110 |