PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc01257.1.g00200.1.sm.mkhc

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 226aa MW: 24881.8 Da PI: 5.2588

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01257.1.g00200.1.sm.mkhc	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	99.9	3.7e-31	30	149	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79 lppGf+F P+deelvv++L++k++ +++ + v++ev ++ +Pw+L+ k+ + ++wyfFs++ ++r+t Zpz_sc01257.1.g00200.1.sm.mkhc 30 LPPGFHFFPSDEELVVHFLRRKASLLPCQRDVVVPEVLPNQQDPWELDGKALQAGNQWYFFSHAT--------QSRVTP 100 79**************************778**********966667789**975........5799 PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkge.ktdWvmheyrl 128 +gyW+ d+ v s +g +vg+k+tLvf gr g+ +t+Wvmhey+l Zpz_sc01257.1.g00200.1.sm.mkhc 101 NGYWNPVCDDEMVSS-GGGNVGIKRTLVFSLGRPCGGThETNWVMHEYHL 149 *******999999.9999******9999887648******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.09E-40	23	188	IPR003441	NAC domain
PROSITE profile	PS51005	37.853	30	190	IPR003441	NAC domain
Pfam	PF02365	9.0E-22	31	149	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MSDSRLPPAS SPSTSSSFAP HLAMVGPSDL PPGFHFFPSD EELVVHFLRR KASLLPCQRD 60 VVVPEVLPNQ QDPWELDGKA LQAGNQWYFF SHATQSRVTP NGYWNPVCDD EMVSSGGGNV 120 GIKRTLVFSL GRPCGGTHET NWVMHEYHLL DGSCKGSGGG TSSSSKRLHK KKSHSEIECN 180 NWVICRVFDS SCGSQVSFQD EGMELSCLDE VFLSLDDYDE VSLPNK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-31	30	195	17	170	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-31	30	195	17	170	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-31	30	195	17	170	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-31	30	195	17	170	NO APICAL MERISTEM PROTEIN
3swm_A	7e-31	30	195	20	173	NAC domain-containing protein 19
3swm_B	7e-31	30	195	20	173	NAC domain-containing protein 19
3swm_C	7e-31	30	195	20	173	NAC domain-containing protein 19
3swm_D	7e-31	30	195	20	173	NAC domain-containing protein 19
3swp_A	7e-31	30	195	20	173	NAC domain-containing protein 19
3swp_B	7e-31	30	195	20	173	NAC domain-containing protein 19
3swp_C	7e-31	30	195	20	173	NAC domain-containing protein 19
3swp_D	7e-31	30	195	20	173	NAC domain-containing protein 19
4dul_A	8e-31	30	195	17	170	NAC domain-containing protein 19
4dul_B	8e-31	30	195	17	170	NAC domain-containing protein 19
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	169	173	KKKSH

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01257.1.g00200.1.sm.mkhc

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025823281.1	1e-103	NAC domain-containing protein 104-like isoform X1
Swissprot	Q8GWK6	5e-56	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A3L6PXI4	1e-103	A0A3L6PXI4_PANMI; NAC transcription factor 29-like
STRING	Pavir.J14631.1.p	1e-101	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3667	36	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	1e-56	xylem NAC domain 1

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]