PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01223.1.g00060.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family FAR1
Protein Properties Length: 517aa    MW: 57356.6 Da    PI: 9.0104
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01223.1.g00060.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1872.7e-27202290289
                          FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkl 81 
                                   fY +YA +vGFsvr+++s++sk +++i++ +fvCs+eg+++e++    +k+r++ a+ r gC+a+l+v ++ d+kw+vtkl
  Zpz_sc01223.1.g00060.1.am.mk 202 FYIAYAGRVGFSVRIARSRRSKCSESIIMLRFVCSREGFSKEKRAVaGKKTRKRAASIREGCNAMLEVLRRGDNKWVVTKL 282
                                   9**************************************9998877467778888999*********************** PP

                          FAR1  82 eleHnHel 89 
                                   ++eHnHe+
  Zpz_sc01223.1.g00060.1.am.mk 283 VKEHNHEI 290
                                   ******96 PP
2FAR162.71.1e-19324414291
                          FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtk 80 
                                   fY +YA++vGF+ r+++s+ks ++++ ++ ++vCs++ +++ ++++  ++k+ +    +r gC+a +++ ++++++w+v+k
  Zpz_sc01223.1.g00060.1.am.mk 324 FYYSYASRVGFEARVRQSRKS-QDESLKMLKLVCSRHRYHSGRENNgeDTKRVHALDPSRNGCDALFEIVRKDKDVWMVSK 403
                                   9*******************9.6777**************9999995455556677789********************** PP

                          FAR1  81 leleHnHelap 91 
                                   l leH+Hel+p
  Zpz_sc01223.1.g00060.1.am.mk 404 LILEHTHELNP 414
                                   ********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.6E-25202290IPR004330FAR1 DNA binding domain
PfamPF031015.9E-17324414IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MLNYRLVHEA ERERSAPSRG SSVSTTPWIS AVTLGTKALC LDENSSILAT TFERGSFAGL  60
RNELRLPISG ACACAPLSES GSTAGRLLYA APMNLWENSV QRLVAEQGMM EPQVTELEDD  120
SINFWASLGV SPTVDQMPLH GVQVVEHQSQ PLLAAAAAAA AAAAVQSQSQ SVCKDLFPVE  180
SESCLEPQLG MEFDSGEAAK TFYIAYAGRV GFSVRIARSR RSKCSESIIM LRFVCSREGF  240
SKEKRAVAGK KTRKRAASIR EGCNAMLEVL RRGDNKWVVT KLVKEHNHEI GLPSRVHYIA  300
IETDAVIDPY VGMEFESLES AKTFYYSYAS RVGFEARVRQ SRKSQDESLK MLKLVCSRHR  360
YHSGRENNGE DTKRVHALDP SRNGCDALFE IVRKDKDVWM VSKLILEHTH ELNPEPDSRV  420
RCVRSQGSPL SRSSSPMREK KRMEETLVLV VVVILGASFQ SQADVSQQRF LSAHVSIPLI  480
SSAKALARQP MISPRRRDRG RMCVVAGVKL VAERIEH
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01223.1.g00060.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021320512.10.0protein FAR1-RELATED SEQUENCE 5
RefseqXP_021320514.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A1Z5R8740.0A0A1Z5R874_SORBI; Uncharacterized protein
STRINGPavir.Fa01859.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.13e-32FAR1-related sequence 7