PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc01189.1.g00130.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 232aa MW: 25054.3 Da PI: 9.8177

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01189.1.g00130.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43	1e-13	123	167	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W++eE+ l++ a ++lG g+W+ I+r + ++Rt+ q+ s+ qk+ Zpz_sc01189.1.g00130.1.am.mk 123 PWSEEEHRLFLTALEKLGRGDWRGISRGFVTTRTPTQVASHAQKF 167 8******************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.532	116	172	IPR017930	Myb domain
SuperFamily	SSF46689	3.44E-17	118	173	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.9E-18	119	171	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	4.6E-10	120	163	IPR009057	Homeodomain-like
SMART	SM00717	1.2E-10	120	170	IPR001005	SANT/Myb domain
CDD	cd00167	3.58E-10	123	168	No hit	No description
Pfam	PF00249	6.5E-11	123	166	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MHHSDVVQTR RGCSGCGSYY GHTSTACCGG GLRLFGVQLN AACSSPESQQ LHKSYSMDCL 60 TLQGSSPLVA APLFSSSSAL LLSSVAMHEG GERRAAEGSG YLSDGGGRGG GTAAFRERKK 120 GVPWSEEEHR LFLTALEKLG RGDWRGISRG FVTTRTPTQV ASHAQKFFLR QNSAGKKNAK 180 RRSSLFDMVP PPSTFSGLYF AYIPFFKTSP AENILGLCKE YTPSSLLSIR ER

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01189.1.g00130.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF184673	5e-72	KF184673.1 Saccharum hybrid cultivar R570 clone BAC 008G08 complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004961036.3	4e-65	transcription factor SRM1
TrEMBL	A0A059Q1B4	1e-65	A0A059Q1B4_9POAL; Transcription factor
STRING	Pavir.J35324.1.p	3e-69	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4932	30	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47390.1	2e-36	MYB_related family protein