PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01162.1.g00050.1.am.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 720aa    MW: 80221.8 Da    PI: 4.7815
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01162.1.g00050.1.am.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM461.7e-143277146
                             NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwd 46
                                    lp GfrFhPtdeelv +yLk k++g+ +++ evi+e+d++k+eP++
  Zpz_sc01162.1.g00050.1.am.mkhc 32 LPLGFRFHPTDEELVRHYLKGKITGQINSEVEVIPEIDVCKCEPHR 77
                                    699************************9999*************86 PP
2NAM155.13e-48882611128
                             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k............................. 49 
                                     lp GfrFhPtdeelv +yLk k++g+ +++ evi+e+d++k+ePwdLp +                             
  Zpz_sc01162.1.g00050.1.am.mkhc  88 LPLGFRFHPTDEELVRHYLKGKITGQINSEVEVIPEIDVCKCEPWDLPgNrircafprffsfarfhlnlllvqdsdaaa 166
                                     699************************9999*****************5489*************************** PP

                             NAM  50 ............kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk....kgelvglkktLvfykgr 112
                                                  +++e+ ew+fF+++d+ky++g+r+nrat++gyWkatgkd+ + sk    k++++g+kktLvf+kgr
  Zpz_sc01162.1.g00050.1.am.mkhc 167 clpallnlsyksLIRSEDPEWFFFAPKDRKYPNGSRSNRATEAGYWKATGKDRVIRSKgdkrKQHVIGMKKTLVFHKGR 245
                                     ***9999988765666888**************************************988767777************* PP

                             NAM 113 apkgektdWvmheyrl 128
                                     apkge+t W+mheyr 
  Zpz_sc01162.1.g00050.1.am.mkhc 246 APKGERTGWIMHEYRT 261
                                     **************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.63E-152176IPR003441NAC domain
PROSITE profilePS510059.463275IPR003441NAC domain
PfamPF023652.8E-63357IPR003441NAC domain
SuperFamilySSF1019417.19E-1979147IPR003441NAC domain
PROSITE profilePS5100551.0588282IPR003441NAC domain
PfamPF023652.0E-2689260IPR003441NAC domain
SuperFamilySSF1019413.4E-35159282IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0071470Biological Processcellular response to osmotic stress
GO:1900426Biological Processpositive regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 720 aa     Download sequence    Send to blast
YPPSAANPPR SGRRRISPSH RATMTVMELK ALPLGFRFHP TDEELVRHYL KGKITGQINS  60
EVEVIPEIDV CKCEPHRATM TVMELKALPL GFRFHPTDEE LVRHYLKGKI TGQINSEVEV  120
IPEIDVCKCE PWDLPGNRIR CAFPRFFSFA RFHLNLLLVQ DSDAAACLPA LLNLSYKSLI  180
RSEDPEWFFF APKDRKYPNG SRSNRATEAG YWKATGKDRV IRSKGDKRKQ HVIGMKKTLV  240
FHKGRAPKGE RTGWIMHEYR TTEPEFECGE QGSYVLYRLF CKQEEKNERL TPEEMDRSGY  300
SPTTPRSSPN NIEANEEAFT LLNKESPEST LHDSPTNLPN SVETHDVSLT RWLVDRTDNS  360
AANAVNVSKT PLNGHIDGIA KVDPSVGGVT QLIDSQQQHN GDPNHFAAGS APILQHEENG  420
FFNFQQGMMG FDGNVNAPDA IDEFLNQALT DPDEHSSTTS KVQYDSDPGI MAPEFGNHGI  480
MQGELPDDQA WWASLNFDLD EPNSLLPYDT TDPDVLSMDS GAESLHDLFN GWSTEPAVQG  540
TGITIMPRQS QSNVQQNNLF LRQGIANRRL RLQEYLSPNI ESATNVDCED KASCTVTSDY  600
LDEAAEESTA EKGEPYDEDD AESTGITIRS RHPAPSSSAT SSFTQQGTAV RRLRLQSDLK  660
TGPCSIIDES SSCVTGKTES QHNVEKSEIE EDAGTNFAES IDASGSCHDD EQKNMPEHGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-388728316166NO APICAL MERISTEM PROTEIN
1ut4_B7e-388728316166NO APICAL MERISTEM PROTEIN
1ut7_A7e-388728316166NO APICAL MERISTEM PROTEIN
1ut7_B7e-388728316166NO APICAL MERISTEM PROTEIN
3swm_A7e-388728319169NAC domain-containing protein 19
3swm_B7e-388728319169NAC domain-containing protein 19
3swm_C7e-388728319169NAC domain-containing protein 19
3swm_D7e-388728319169NAC domain-containing protein 19
3swp_A7e-388728319169NAC domain-containing protein 19
3swp_B7e-388728319169NAC domain-containing protein 19
3swp_C7e-388728319169NAC domain-containing protein 19
3swp_D7e-388728319169NAC domain-containing protein 19
4dul_A7e-388728316166NAC domain-containing protein 19
4dul_B7e-388728316166NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00108PBMTransfer from AT4G35580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01162.1.g00050.1.am.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2497493e-55AK249749.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf54a18, mRNA sequence.
GenBankAK3659393e-55AK365939.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2039C20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820792.10.0protein NTM1-like 9
TrEMBLA0A0A9CTY00.0A0A0A9CTY0_ARUDO; Uncharacterized protein
STRINGPavir.Fb00405.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51723859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.12e-63NAC transcription factor-like 9