PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc01146.1.g00260.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 251aa MW: 26853.6 Da PI: 10.8239 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.7 | 0.00081 | 42 | 64 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg+ F + L H +H Zpz_sc01146.1.g00260.1.sm.mk 42 FVCKTCGRAFATFQALGGHRTSH 64 89*********999998888777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.616 | 42 | 69 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.7E-9 | 42 | 66 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.07E-7 | 42 | 114 | No hit | No description |
SMART | SM00355 | 0.38 | 42 | 64 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 44 | 64 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 3.9E-9 | 92 | 117 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.201 | 92 | 119 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.94 | 92 | 114 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 94 | 114 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MTKHPRDAGD SVPLSLSLSL ALGGEGRAKK LRGRAAGDDG EFVCKTCGRA FATFQALGGH 60 RTSHLRGRHH GGLALGLASA APGKAEKPAA SHECGFCGAA FEMGQALGGH MRRHREEAAA 120 SAQAPPVLLQ LFVAQRKICQ YFLQLIHQKA QPDANFRGSP RASSVADRRQ IDTVRSLADT 180 SAGVRFRSAS DRPRHITAFW KSRPCHTSPG GAHTYPLLLR IALPVYFSDG DTGRPIKPAA 240 ETPIASRYCA R |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc01146.1.g00260.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198420.1 | 2e-44 | zinc finger protein ZAT8-like | ||||
TrEMBL | A0A3B6LWG6 | 4e-44 | A0A3B6LWG6_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446UTV6 | 4e-44 | A0A446UTV6_TRITD; Uncharacterized protein | ||||
STRING | Traes_5BL_B038BE0A3.1 | 7e-45 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1305 | 30 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46080.1 | 3e-12 | C2H2 family protein |