PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01134.1.g00030.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family DBB
Protein Properties Length: 287aa    MW: 30342.6 Da    PI: 4.6236
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01134.1.g00030.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.64.5e-07447542
                      zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                                  +C+ ++ +++   C  ++  lC  C    H+       H+++pl
  Zpz_sc01134.1.g00030.1.sm.mk  4 NCDVCGGEPAAVLCCADEAALCSACDRRVHRAnklagkHRRIPL 47
                                  7*****************************77999999999886 PP
2zf-B_box23.71e-075998437
                      zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                                  + C+ ++e +   fC +++  lC dC + +H+       H
  Zpz_sc01134.1.g00030.1.sm.mk 59 PLCDVCKERRGLVFCVEDRAVLCTDCDDPIHSAndltakH 98
                                  78*****************************655555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003366.4E-10147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.139147IPR000315B-box-type zinc finger
PfamPF006433.4E-6447IPR000315B-box-type zinc finger
CDDcd000211.73E-7547No hitNo description
SMARTSM003369.4E-1456103IPR000315B-box-type zinc finger
PROSITE profilePS501199.21456103IPR000315B-box-type zinc finger
PfamPF006431.8E-55999IPR000315B-box-type zinc finger
CDDcd000212.84E-859103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009641Biological Processshade avoidance
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MRVNCDVCGG EPAAVLCCAD EAALCSACDR RVHRANKLAG KHRRIPLLHP SSDDGATGPL  60
CDVCKERRGL VFCVEDRAVL CTDCDDPIHS ANDLTAKHSR FLLVGAKLSA AEAPSSADCG  120
GGESDGSVAA ACAQEQDSST DRSSVLERGD NHNGSGGGAM ISDYLTNICP GWRVDDLLVD  180
DSPFSATAPK PGRDEQVPSM DADLFDVVAG RSEKRGSGAW GPSWTSTGDL GFEEVPTAPT  240
AARPGKQGRV RETFWNNDMD NDSDAFAVPE ITPPPAKKAR PSSFWCF
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01134.1.g00030.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3632773e-95AK363277.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2013O17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812143.11e-112B-box zinc finger protein 20-like
TrEMBLA0A2S3HGD11e-111A0A2S3HGD1_9POAL; Uncharacterized protein
STRINGSi006993m1e-105(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121002430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.14e-51salt tolerance homolog2