PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01126.1.g00020.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 358aa    MW: 38782.4 Da    PI: 6.0714
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01126.1.g00020.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.83e-30162220259
                                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                     +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+ver+++dp++++ tY+geHnh 
  Zpz_sc01126.1.g00020.1.sm.mkhc 162 SDVWAWRKYGQKPIKGSPYPRGYYRCSSSkGCAARKQVERCRTDPNTFILTYTGEHNHA 220
                                     79*************************998****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-30149222IPR003657WRKY domain
PROSITE profilePS5081132.833156222IPR003657WRKY domain
SuperFamilySSF1182906.67E-26160222IPR003657WRKY domain
SMARTSM007747.8E-36161221IPR003657WRKY domain
PfamPF031063.2E-25163219IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MEEERFFNNW DLDAVVRLAC RRRLSPPPMQ VNDPFDAFPP PPPQQAPPPV PSPANEWRFP  60
DLRAGGGQDG GELLRALLAA QPPVLPPLPT PQPPPPQKQQ QLQPVVVAPA EVPAPARAAP  120
ASAPARAQPS GRQVPGAVPR SKRRKNQVKK VVRRVPADGS SSDVWAWRKY GQKPIKGSPY  180
PRGYYRCSSS KGCAARKQVE RCRTDPNTFI LTYTGEHNHA APTHRNSLAG TTRHKLPSTA  240
SPPPPSVVVG SSESRHQQQT SPSPPSTPAG LSPTTPLRTP SMEEDEDELL VEDMEMAGED  300
ELLFLSGDDY SAAPMEPVSS LFDVVDEPFL GSPWATAATA GSPAKEVDDD PTQEDERN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-19145223280Disease resistance protein RRS1
5w3x_D2e-19145223280Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01126.1.g00020.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0343631e-156BT034363.1 Zea mays full-length cDNA clone ZM_BFb0129I18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001130964.11e-139uncharacterized protein LOC100192069
TrEMBLA0A1D6QP271e-138A0A1D6QP27_MAIZE; WRKY transcription factor 22
STRINGGRMZM2G038158_P011e-138(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53583361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.11e-41WRKY family protein