PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01120.1.g00050.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 180aa    MW: 20171.3 Da    PI: 10.7591
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01120.1.g00050.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.34.1e-1191133855
                                     HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                     + ++RR+riN+++  L++l+P+      +K++ +++Le+Av+Y+k Lq
  Zpz_sc01120.1.g00050.1.sm.mkhc  91 IAQKRRERINEKLRVLQQLIPNG-----TKVDISTMLEEAVQYVKFLQ 133
                                     679******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002534.3E-15754IPR001209Ribosomal protein S14
PROSITE profilePS5088813.93583132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.98E-1383143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.61E-1186137No hitNo description
SMARTSM003533.0E-1089138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.2E-1289138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-891133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006412Biological Processtranslation
GO:0022627Cellular Componentcytosolic small ribosomal subunit
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MGHSNVWNSH PKNYGPGSRV CRVCANPHGL IRKYGLMCCR QCFRSNAKDI GFIKGETVTA  60
ATNAVAGDKR IFPMDERRNK SKNTNKKPRT IAQKRRERIN EKLRVLQQLI PNGTKVDIST  120
MLEEAVQYVK FLQLQIKLGT SINSTATLAI SAYTPAPVVF DCHPYASRAN SSFANTIRMN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4v7e_Bd4e-3315415440S ribosomal protein S14
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01120.1.g00050.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4579361e-66AF457936.1 Zea mays clone cho1c.pk002.j14, mRNA sequence.
GenBankDQ2451411e-66DQ245141.1 Zea mays clone 13268 mRNA sequence.
GenBankEU9545491e-66EU954549.1 Zea mays clone 1470027 40S ribosomal protein S29 mRNA, complete cds.
GenBankEU9579161e-66EU957916.1 Zea mays clone 1633015 40S ribosomal protein S29 mRNA, complete cds.
GenBankEU9624581e-66EU962458.1 Zea mays clone 242876 40S ribosomal protein S29 mRNA, complete cds.
GenBankEU9655551e-66EU965555.1 Zea mays clone 286898 40S ribosomal protein S29 mRNA, complete cds.
GenBankEU9697351e-66EU969735.1 Zea mays clone 334813 40S ribosomal protein S29 mRNA, complete cds.
GenBankEU9753291e-66EU975329.1 Zea mays clone 487665 40S ribosomal protein S29 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3L6Q4B57e-51A0A3L6Q4B5_PANMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP196223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.11e-24bHLH family protein