PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01112.1.g00160.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 304aa    MW: 31996.1 Da    PI: 8.2137
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01112.1.g00160.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.94.9e-05157202454
                                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                     a n+  r RR+r+ +++  L++l+ +      +K + a++L +A  YI+ L
  Zpz_sc01112.1.g00160.1.sm.mkhc 157 ATNKKPRVRRERLGERIIALQQLVSPF-----GKSDTATVLHEALGYIRFL 202
                                     569999********************8.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.14E-12152215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.998153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-8157212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-4159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.19E-4163207No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MVKEEEIITE AGGRGYMDMV SLGDEAFFQC LSPSSYFSSS VISTATTGAT PAASSPTCVS  60
YMDMAPYDHL LNFTGRQEQY DCHSNGPFCL QYNGADRATP VVFPQKSSPT TECSSSISMS  120
SSPPATSISA ISSTKPQALK KKGARCSDQR KGATASATNK KPRVRRERLG ERIIALQQLV  180
SPFGKSDTAT VLHEALGYIR FLHDQVQVLS SPYMQSLPAA AHATVHESAA GTVVEPPQRP  240
SDLRSRGLCL VPISFTDRVA GDGRCNGADL WSVAVPAVTK NVTAAAGSKG AAAALPGGHP  300
GHLA
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01112.1.g00160.1.sm.mkhc
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466417.11e-109transcription factor bHLH123 isoform X1
TrEMBLC5X0621e-107C5X062_SORBI; Uncharacterized protein
STRINGSb01g007440.11e-108(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80822529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.11e-32bHLH family protein