PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc01089.1.g00020.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

ZF-HD

Protein Properties

Length: 372aa MW: 40026 Da PI: 10.228

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01089.1.g00020.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	96.6	2e-30	304	360	2	59
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 + v+Y+eC++NhAas+GghavDGC+Efm+ g++gta+al CaAC CHR+FHRreve Zpz_sc01089.1.g00020.1.am.mk 304 KVVHYRECQRNHAASIGGHAVDGCREFMAL-GADGTADALVCAACSCHRSFHRREVEA 360 5799***********************9.999*******************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02704	6.8E-10	65	98	IPR003854	Gibberellin regulated protein
ProDom	PD125774	2.0E-17	302	356	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	3.8E-28	306	358	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	6.1E-25	307	358	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	25.696	308	357	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MAKLLALLLF CSLFLAAAAV MASAAEVIVI SGPSLPLFIA PSPGVEEGND DLHRRRSIAP 60 STGNHECHRR CSKTHHRKPC LFFCNKCCTK CLCVPPGSPL AAAGRLDANQ KSKRSLGKMA 120 DTPGRLVPSL RAPPVTVLRI DRLSLRAFME RSGAGKRTEK SRTARTPTKF AVLQPGTTLA 180 GKKLLDAFNR TPHPEGAGQA SQFIIMQNHT NNWWGTCASS NGTVFDFGVR ILQNRKHHSL 240 NQVVRHPRTP FSSSFLPVSP HQLPFLLVLE APQSPPPTTT TTATMGPKQD PPTANGTATR 300 KETKVVHYRE CQRNHAASIG GHAVDGCREF MALGADGTAD ALVCAACSCH RSFHRREVEA 360 AECSSTTTAA SG

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MAKLLALLLF CSLFLAAAAV MASAAEVIVI SGPSLPLFIA PSPGVEEGND DLHRRRSIAP  60
STGNHECHRR CSKTHHRKPC LFFCNKCCTK CLCVPPGSPL AAAGRLDANQ KSKRSLGKMA  120
DTPGRLVPSL RAPPVTVLRI DRLSLRAFME RSGAGKRTEK SRTARTPTKF AVLQPGTTLA  180
GKKLLDAFNR TPHPEGAGQA SQFIIMQNHT NNWWGTCASS NGTVFDFGVR ILQNRKHHSL  240
NQVVRHPRTP FSSSFLPVSP HQLPFLLVLE APQSPPPTTT TTATMGPKQD PPTANGTATR  300
KETKVVHYRE CQRNHAASIG GHAVDGCREF MALGADGTAD ALVCAACSCH RSFHRREVEA  360
AECSSTTTAA SG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01089.1.g00020.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1431	34	120

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74660.1	2e-23	mini zinc finger 1