PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc01057.1.g00140.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 273aa MW: 29528.9 Da PI: 5.8762 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 61.3 | 2e-19 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd++lv +v+q+G ++W++ ++ g+ R++k+c++rw +yl Zpz_sc01057.1.g00140.1.sm.mkhc 14 RGAWSAEEDQRLVAYVRQHGHPNWRALPKQAGLLRCGKSCRLRWINYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 50.3 | 5.7e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E+ l+++++++lG++ W++Ia+ ++ gRt++++k+ w+++l Zpz_sc01057.1.g00140.1.sm.mkhc 67 RGNFTADEEGLIIRLHHELGNR-WSAIAAQLP-GRTDNEIKNVWHTHL 112 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.335 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.29E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.43E-11 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.0E-26 | 65 | 116 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.469 | 66 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 2.7E-13 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.6E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.38E-10 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MGRVPCCEKE GLRRGAWSAE EDQRLVAYVR QHGHPNWRAL PKQAGLLRCG KSCRLRWINY 60 LRPDIKRGNF TADEEGLIIR LHHELGNRWS AIAAQLPGRT DNEIKNVWHT HLKKRLENAD 120 GGGGRKKQAG KSKTAKKAAQ AAADDVEGAA ASPFTDTAAS PGLSSSGVTC STATESTAAA 180 SSVDNAATTS ASRQVAVKAE EIESLSTAEL PPMDESFWTS AEVMDMDLGA MDEELGLASS 240 APSTGDHEDM EFWLQMLLES GDMNSGLERH VNI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-25 | 12 | 117 | 5 | 109 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in cold stress response (PubMed:14675437, PubMed:20807373, PubMed:22246661). Regulates positively the expression of genes involved in reactive oxygen species (ROS) scavenging such as peroxidase and superoxide dismutase during cold stress. Transactivates a complex gene network that have major effects on stress tolerance and panicle development (PubMed:20807373). {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|PubMed:22246661}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00127 | DAP | Transfer from AT1G06180 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc01057.1.g00140.1.sm.mkhc |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold stress. {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|Ref.2}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT083768 | 1e-137 | BT083768.1 Zea mays full-length cDNA clone ZM_BFb0037L06 mRNA, complete cds. | |||
GenBank | KJ726898 | 1e-137 | KJ726898.1 Zea mays clone pUT3443 MYB transcription factor (MYB121) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004982863.1 | 1e-122 | transcription factor MYB4 | ||||
Swissprot | Q7XBH4 | 8e-78 | MYB4_ORYSJ; Transcription factor MYB4 | ||||
TrEMBL | A0A0A9PE01 | 1e-127 | A0A0A9PE01_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.J09313.1.p | 1e-123 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06180.1 | 3e-72 | myb domain protein 13 |
Publications ? help Back to Top | |||
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