PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zpz_sc01052.1.g00020.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 125aa MW: 14735.4 Da PI: 10.3697 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.7 | 1.6e-16 | 38 | 120 | 13 | 97 |
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 +++ l ++a++ g++ +++ ++++ + + W+ ++ + +sgr +l++GW +Fv++ngL++gD+++F+l+++++ ++v Zpz_sc01052.1.g00020.1.sm.mk 38 NHLKELGSRYARTVGLPARRG-QVVVLQYMRKIWKTEM-MIHHSGRQFLGGGWLRFVHDNGLRVGDICLFELKNERKVTMV 116 556667788999999997776.88888999********.677888889************************999999999 PP EEEE CS B3 94 vkvf 97 v+++ Zpz_sc01052.1.g00020.1.sm.mk 117 VHII 120 9986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.75E-16 | 22 | 120 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.3E-5 | 31 | 123 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 9.4E-16 | 32 | 120 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.7E-14 | 38 | 120 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 6.04E-14 | 45 | 120 | No hit | No description |
PROSITE profile | PS50863 | 11.223 | 59 | 123 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 125 aa Download sequence Send to blast |
MKSCKCCERD LNHLDAKNQN MTCFLRLMTG NIKCNTENHL KELGSRYART VGLPARRGQV 60 VVLQYMRKIW KTEMMIHHSG RQFLGGGWLR FVHDNGLRVG DICLFELKNE RKVTMVVHII 120 WREKF |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Zpz_sc01052.1.g00020.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025797617.1 | 1e-25 | B3 domain-containing protein Os03g0619800-like isoform X1 | ||||
Refseq | XP_025797619.1 | 1e-25 | B3 domain-containing protein Os03g0619800-like isoform X2 | ||||
Refseq | XP_025797620.1 | 1e-25 | B3 domain-containing protein Os03g0619800-like isoform X3 | ||||
Swissprot | Q6AV22 | 8e-19 | Y3196_ORYSJ; B3 domain-containing protein Os03g0619600 | ||||
TrEMBL | A0A0A9SJW4 | 3e-33 | A0A0A9SJW4_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.Ib02115.1.p | 3e-29 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP585 | 31 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G31640.1 | 3e-11 | B3 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|