PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc01022.1.g00170.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bHLH | ||||||||
Protein Properties | Length: 230aa MW: 24303.3 Da PI: 6.343 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 22.5 | 2e-07 | 127 | 153 | 5 | 31 |
HHHHHHHHHHHHHHHHHHHHCTSCCC. CS HLH 5 hnerErrRRdriNsafeeLrellPkas 31 h+++Er RR+ri +++ L+el+P+ Zpz_sc01022.1.g00170.1.sm.mkhc 127 HSIAERLRRERIAERIRALQELVPNTN 153 99**********************952 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.09E-7 | 120 | 154 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 10.791 | 122 | 186 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.2E-5 | 127 | 153 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.8E-7 | 127 | 158 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MAGQQPPGGS EDDFLEHLFT FPTAGAGGHA GAGGGGGGDH PFPLALSLDA AAEASGAAKP 60 DRDPVQLAGL FPPVFAGAGG MQQTNLCPPP PHQVFHAQPK PGEGAMAQPP APRPKVRARR 120 GQATDPHSIA ERLRRERIAE RIRALQELVP NTNKGEASDG GSTQHIWEKW STDGTEKQVA 180 KLMEEDIGAA MQFLQSKALC MMPISLAMAI YDTQHPQEHH PLKPEPNSSS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 131 | 136 | RLRRER |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for ovule fertilization. {ECO:0000269|PubMed:15634699}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc01022.1.g00170.1.sm.mkhc |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025804227.1 | 1e-114 | transcription factor UNE12 | ||||
Swissprot | O22768 | 2e-39 | UNE12_ARATH; Transcription factor UNE12 | ||||
TrEMBL | A0A2S3GW17 | 1e-112 | A0A2S3GW17_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J03221.1.p | 1e-113 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2656 | 35 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02590.3 | 4e-28 | bHLH family protein |
Publications ? help Back to Top | |||
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