PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc01008.1.g00200.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 417aa MW: 46046.9 Da PI: 9.726 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65 | 1.6e-20 | 173 | 223 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+W+AeIrdp+ r +r +lg+f+taeeAa+a+++a+++++g+ Zpz_sc01008.1.g00200.1.am.mk 173 VYRGVRQRP-WGKWAAEIRDPR----RaARKWLGTFDTAEEAARAYDRAALEFRGA 223 69*******.**********82....48*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.1E-14 | 173 | 222 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-35 | 173 | 236 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-23 | 173 | 231 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 25.304 | 173 | 230 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.7E-32 | 173 | 231 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-11 | 174 | 185 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.10E-32 | 174 | 232 | No hit | No description |
PRINTS | PR00367 | 2.8E-11 | 196 | 212 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 417 aa Download sequence Send to blast |
MWPGAGPEVS PCAVCLSMSG SVYKSLHLQV PAPVQTHSKL RLISHLAQSS VMTKKLVHAM 60 ATSKRGPGAQ IDNQRKQVSD YADGRTMISH EQEHGIIVAA LRHVLSGYST PPPEVVTVAS 120 GEACGVCGID GCLGCDFFTD DKAGPPELTQ GVSCGTVTGG AEKRRRRRTR NNVYRGVRQR 180 PWGKWAAEIR DPRRAARKWL GTFDTAEEAA RAYDRAALEF RGARAKLNFP HQEGPFLGHH 240 GGDLIAATTE TLTPPSPCSG DAEESAPGVW QMGGPDGPGD ELWDGLRDQR QAIRRWGPRR 300 LNFVGISALH RYLQSPELCA CSFFLVELFR LTVHLSASLV VRSCLLMEDC GETPLAAASG 360 RRPVLHCSVL VVKEVIVVHH IVVVLVQACK HPSSWRLWWR WLRMPVPRRP GHRRRRW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-21 | 174 | 232 | 15 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 162 | 167 | KRRRRR |
2 | 163 | 168 | RRRRRT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc01008.1.g00200.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK067195 | 3e-65 | AK067195.1 Oryza sativa Japonica Group cDNA clone:J013098P10, full insert sequence. | |||
GenBank | AP005891 | 3e-65 | AP005891.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:B1045B05. | |||
GenBank | AP014965 | 3e-65 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012617 | 3e-65 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. | |||
GenBank | EU622934 | 3e-65 | EU622934.1 Oryza sativa Indica Group EATB (EATB) mRNA, complete cds. | |||
GenBank | KP212899 | 3e-65 | KP212899.1 Oryza sativa Indica Group cultivar IR64-Sub1 AP2 domain containing protein (EATB) gene, complete cds. | |||
GenBank | KP212900 | 3e-65 | KP212900.1 Oryza sativa Indica Group cultivar PS-2 AP2 domain containing protein (EATB) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001144222.2 | 6e-80 | ethylene-responsive transcription factor ERF109-like | ||||
TrEMBL | A0A1E5WBD2 | 1e-81 | A0A1E5WBD2_9POAL; Uncharacterized protein | ||||
STRING | Si030856m | 3e-78 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1242 | 36 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34410.1 | 2e-22 | redox responsive transcription factor 1 |