PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00981.1.g00020.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TALE
Protein Properties Length: 708aa    MW: 74059.2 Da    PI: 6.4783
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00981.1.g00020.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.79.8e-094124491954
                                   HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                      Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                   Fe   ++yp+ +++  LAk++gL  +qV++WF N R +
  Zpz_sc00981.1.g00020.1.am.mk 412 FEHflHPYPKDSDKIMLAKQTGLARSQVSNWFINARVR 449
                                   664459******************************88 PP
2BELL113.79.9e-37276347172
                          BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                                   erqelq+kk kL+++l+eV++rY+qy+ q+q v ssFea+ag gsa+ Yt+lAl++iSr+FrcL+daia q+
  Zpz_sc00981.1.g00020.1.am.mk 276 ERQELQMKKCKLINMLDEVEQRYRQYHGQMQEVSSSFEAAAGAGSARTYTALALRTISRQFRCLRDAIAAQV 347
                                   79*******************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.7E-57201345IPR006563POX domain
PfamPF075263.0E-49206344IPR006563POX domain
PROSITE profilePS5007111.677390453IPR001356Homeobox domain
CDDcd000865.28E-12393454No hitNo description
SMARTSM003891.7E-8393457IPR001356Homeobox domain
SuperFamilySSF466893.12E-16395459IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.5E-28396459IPR009057Homeodomain-like
PfamPF059201.0E-17410449IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009610Biological Processresponse to symbiotic fungus
GO:0009737Biological Processresponse to abscisic acid
GO:0010197Biological Processpolar nucleus fusion
GO:0010201Biological Processresponse to continuous far red light stimulus by the high-irradiance response system
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 708 aa     Download sequence    Send to blast
MAAYYHGGAG TDIQASADGL QTLYLMNPSF AGYGDAGAPA PXXXXRRRIS VSAITMAAYY  60
HGGAGTDIQA SADGLQTLYL MNPSFAGYGD AGAPAPGGAN MMLLNSAVST MTPASFGHQQ  120
SPSPAAAQHF VGIRLEAQPS GAYNLWTPAS TGASDMSPTQ QTTPGAGVSA VLSLSSREAP  180
PVTVAAVAGD EGKYLGEAAA TSQGQMVMNS KYLKAAQELL DEVVCVSKGV EDAKAAVAKS  240
AAAVKKKEDS EGVSGGGTED GGGAKSGSAP ELSTAERQEL QMKKCKLINM LDEVEQRYRQ  300
YHGQMQEVSS SFEAAAGAGS ARTYTALALR TISRQFRCLR DAIAAQVRAA SRALGEDADA  360
GGRTVGSRLR FIDHQLRQQR ALQQLGMMQG GAWRPQRGLP ERSVSILRAW LFEHFLHPYP  420
KDSDKIMLAK QTGLARSQVS NWFINARVRL WKPMVEEMYL EETKDRDAAA GGNDEGKSGG  480
GGKSGNVDDN GGVDATPRPD REAAKGVHGS SLLELAGDQQ TAHAGFYYGD EEDEDGAADA  540
MHRRLKKARG EESAATAAPA AGTFHHHVHD MAALHAQAAA AARQQHEEVS HRELLMKFME  600
SGGAGATRDH QHHQDGGYSL FAQAAPYGQF STEPFAFARN GGVSLTLGLP HGAGAGAGAG  660
GSADQTASFL MGSSTAGDSA SHGAAGGYDM NMQSTKSFAA QLMRDFVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A1e-16399457563Homeobox protein Meis2
4xrm_B1e-16399457563Homeobox protein Meis2
5bng_A1e-16399457159Homeobox protein Meis2
5bng_B1e-16399457159Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00981.1.g00020.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0860920.0BT086092.2 Zea mays full-length cDNA clone ZM_BFc0115J14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827941.10.0BEL1-like homeodomain protein 1
RefseqXP_025827942.10.0BEL1-like homeodomain protein 1
RefseqXP_025827943.10.0BEL1-like homeodomain protein 1
RefseqXP_025827944.10.0BEL1-like homeodomain protein 1
SwissprotQ9SJ561e-106BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLA0A2S3ICH10.0A0A2S3ICH1_9POAL; Uncharacterized protein
STRINGPavir.Ha01822.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48163758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.33e-75BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]