PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00954.1.g00070.1.sm.mkhc

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bZIP

Protein Properties

Length: 306aa MW: 33024.2 Da PI: 8.4381

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00954.1.g00070.1.sm.mkhc	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	38.6	2.4e-12	141	180	5	41
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41 k rr+++NReAAr+sR+RKka+i++Le+ + ++Le+e Zpz_sc00954.1.g00070.1.sm.mkhc 141 KTLRRLAQNREAARKSRLRKKAYIQQLETgriRLAQLEQE 180 7789***********************9643466666666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.3E-6	137	209	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.3E-9	137	185	No hit	No description
PROSITE profile	PS50217	8.657	139	182	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.6E-9	141	182	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.5E-8	141	181	No hit	No description
PROSITE pattern	PS00036	0	144	159	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.2E-23	218	292	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MAYPSTSGMI QASSSLHGGT MRRDPEGYDM PSDLDQALLL YFDGHQTKPS IQEQPQTLNI 60 FPSEPMHVEP SPKGSMTTAA AATQVAGSSK PAKPAGGQLG GGKSSKPALK KEGDVVGGSK 120 RGGGAAASSS DQEGPRTPDP KTLRRLAQNR EAARKSRLRK KAYIQQLETG RIRLAQLEQE 180 IQMARDQGAM WGTGALSPDA ALFNLEYERW QGDHRRLVAR LRAAEEEHWP DAELRSYADE 240 TASHYGALMA LKARVAAADP LHLLSGLWKG AAERCLLWIG GFRPSELVKS VMSDVPMHAG 300 VTGEEE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00954.1.g00070.1.sm.mkhc

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025810392.1	1e-151	transcription factor TGAL8-like isoform X2
Swissprot	Q69T21	1e-129	TGAL8_ORYSJ; Transcription factor TGAL8
TrEMBL	A0A2S3HHY1	1e-152	A0A2S3HHY1_9POAL; Uncharacterized protein
TrEMBL	A0A3L6PH66	1e-150	A0A3L6PH66_PANMI; Transcription factor HBP-1b(C38)-like isoform X1
STRING	Pavir.Db00756.1.p	1e-151	(Panicum virgatum)
STRING	Pavir.J05543.1.p	1e-153	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12972	21	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06839.3	3e-67	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]