PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G06839.3 | ||||||||
Common Name | bZIP65, TGA10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bZIP | ||||||||
Protein Properties | Length: 460aa MW: 51166.6 Da PI: 7.2074 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 33.3 | 1.1e-10 | 161 | 189 | 5 | 33 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee 33 k rr+++NReAAr+sR+RKka++++Le AT5G06839.3 161 KTLRRLAQNREAARKSRLRKKAYVQQLES 189 7789***********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 3.8E-9 | 152 | 205 | No hit | No description |
SMART | SM00338 | 5.0E-7 | 157 | 245 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.737 | 159 | 203 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.01E-7 | 161 | 202 | No hit | No description |
CDD | cd14708 | 1.25E-22 | 161 | 213 | No hit | No description |
Pfam | PF00170 | 9.6E-8 | 161 | 191 | IPR004827 | Basic-leucine zipper domain |
PROSITE pattern | PS00036 | 0 | 164 | 179 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 5.0E-31 | 254 | 328 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009046 | anatomy | flower | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 460 aa Download sequence Send to blast |
MQGHHQNHHQ HLSSSSATSS HGNFMNKDGY DIGEIDPSLF LYLDGQGHHD PPSTAPSPLH 60 HHHTTQNLAM RPPTSTLNIF PSQPMHIEPP PSSTHNTDNT RLVPAAQPSG STRPASDPSM 120 DLTNHSQFHQ PPQGSKSIKK EGNRKGLASS DHDIPKSSDP KTLRRLAQNR EAARKSRLRK 180 KAYVQQLESC RIKLTQLEQE IQRARSQGVF FGGSLIGGDQ QQGGLPIGPG NISSEAAVFD 240 MEYARWLEEQ QRLLNELRVA TQEHLSENEL RMFVDTCLAH YDHLINLKAM VAKTDVFHLI 300 SGAWKTPAER CFLWMGGFRP SEIIKVIVNQ IEPLTEQQIV GICGLQQSTQ EAEEALSQGL 360 EALNQSLSDS IVSDSLPPAS APLPPHLSNF MSHMSLALNK LSALEGFVLQ ADNLRHQTIH 420 RLNQLLTTRQ EARCLLAVAE YFHRLQALSS LWLARPRQDG |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 250701_at | 0.0 | ||||
Expression Atlas | AT5G06839 | - | ||||
AtGenExpress | AT5G06839 | - | ||||
ATTED-II | AT5G06839 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: During anther development, accumulates in anther primordia during archesporial cell specification and later present in a horseshoe pattern associated with the lateral and adaxial portion of primordia, prior to the emergence of distinct locules. Expressed throughout sporogenic tissue and surrounding cells layers in adaxial and adaxial locules. Localized to the tapetum and middle layers, gradually fading postmeiosis with degeneration of these cell layers. {ECO:0000269|PubMed:20805327}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed at low levels in inflorescence apex and flowers. {ECO:0000269|PubMed:20805327}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Together with TGA9, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269|PubMed:20805327, ECO:0000269|PubMed:27717447}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00491 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G06839.3 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly induced by flg22 in leaves. {ECO:0000269|PubMed:27717447}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
BioGRID | AT1G14920 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G06839 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ132742 | 0.0 | HQ132742.1 Arabidopsis thaliana bZIP65 (At5g06839) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001190244.1 | 0.0 | bZIP transcription factor family protein | ||||
Swissprot | E3VNM4 | 0.0 | TGA10_ARATH; Transcription factor TGA10 | ||||
TrEMBL | A0A1J3I3I6 | 0.0 | A0A1J3I3I6_NOCCA; Transcription factor HBP-1b(C1) | ||||
STRING | AT5G06839.3 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7207 | 28 | 43 | Representative plant | OGRP7516 | 12 | 18 |
Link Out ? help Back to Top | |
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Phytozome | AT5G06839.3 |
Entrez Gene | 830575 |
iHOP | AT5G06839 |
wikigenes | AT5G06839 |