PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00950.1.g00190.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family SBP
Protein Properties Length: 490aa    MW: 52168.9 Da    PI: 6.6943
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00950.1.g00190.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP125.62e-39203280178
                                   --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                           SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                                   +Cq+egC+adl+ ak+yhrrhkvCe h+ka++v++ g++qrfCqqCsrfh l efDe+krsCr+rL +hn+rrrk+++
  Zpz_sc00950.1.g00190.1.am.mk 203 RCQAEGCKADLTAAKHYHRRHKVCEYHAKAAAVAAGGKQQRFCQQCSRFHVLVEFDESKRSCRKRLTEHNRRRRKPAS 280
                                   6**************************************************************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.1E-33196265IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.923201278IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.84E-37202281IPR004333Transcription factor, SBP-box
PfamPF031107.2E-30204277IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MSSTAMSPVT TDVDFAFAPM QPPYLGFFDA GNMPMPSLER PLLGLGHQQH NNHYDDFDCA  60
ASFPFQDSSF LLPPTTSLPP APPLLTMDMA MAPTSPSSMH QMTLPCVPAE ELYHPAFGVG  120
SSPFLKREDG PVVDAGGGKI GLNLGRRTYF STADVLAVDR LLLTRSPLGG GGGVGAGLGL  180
GLGMAGVLGL GLRAPHHHQQ PPRCQAEGCK ADLTAAKHYH RRHKVCEYHA KAAAVAAGGK  240
QQRFCQQCSR FHVLVEFDES KRSCRKRLTE HNRRRRKPAS EQGDKEDSSP PPKRADTTSY  300
SSDHKSASPA AAKSTAISPN GSGVSCLDMD NNGQMMISSA AAAAPTARSL SALPLGKDGD  360
LDTMLMMRQV HDGDEEQQRF VTSLVLQAQQ HHHNGGVGNV LSTLSCSPVP DQHQNGDCNG  420
FFETHQIPYL YPVALLPSDE ISSPATNLVS CFAPLYGEQC PAPLDCNPPF PCAASCPVSS  480
FPCAASGPEI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-272042771184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1260277KRSCRKRLTEHNRRRRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00950.1.g00190.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ0116141e-123AJ011614.1 Zea mays mRNA for SBP-domain protein 1.
GenBankEU9668911e-123EU966891.1 Zea mays clone 297975 SBP-domain protein 1 mRNA, complete cds.
GenBankKJ7280091e-123KJ728009.1 Zea mays clone pUT6144 SBP transcription factor (SBP10) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002451645.21e-131squamosa promoter-binding-like protein 5
TrEMBLA0A1Z5RL611e-128A0A1Z5RL61_SORBI; Uncharacterized protein
STRINGSb04g005180.11e-129(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23753593
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.14e-38squamosa promoter binding protein-like 8