PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00939.1.g00110.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 295aa MW: 31263.3 Da PI: 4.5596 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.7 | 3.9e-20 | 94 | 144 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +g+++AeIrd + r r++lg+f+taeeAa+ ++ a+ +l+g Zpz_sc00939.1.g00110.1.sm.mk 94 TKFRGVRRRP-WGKYAAEIRDpW-----RgVRVWLGTFDTAEEAARVYDSAAIQLRG 144 69********.**********88.....55*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.34E-28 | 94 | 151 | No hit | No description |
Pfam | PF00847 | 1.2E-12 | 94 | 144 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.0E-35 | 95 | 158 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.985 | 95 | 152 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-21 | 95 | 153 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 6.2E-29 | 95 | 152 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-10 | 96 | 107 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-10 | 118 | 134 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MSRSRTVRIF WDDPDVTDSS GEEDGYGTRK VGRMVRELPP VEVAAAAAGA GVVMPEQCSA 60 GDGDRGRRAA TSGPRGCSGA RRLGKGAGSV VQGTKFRGVR RRPWGKYAAE IRDPWRGVRV 120 WLGTFDTAEE AARVYDSAAI QLRGPNTTTN FSATATDSGG SGGGHQDQVT AGYESGAESS 180 PAVSSPTSVL RKVPSLSSLA DKDEPAAECR LAALEELGEF VPFEDAPVYT SNSSFWDFEP 240 DAAGFLYAEP SSPETTWDAA ATTSASSGAA PVHQENDYFQ DLRDLFPLNP LPAIF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-20 | 84 | 151 | 5 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00939.1.g00110.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006644464.1 | 1e-131 | PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like | ||||
TrEMBL | J3L2I6 | 1e-129 | J3L2I6_ORYBR; Uncharacterized protein | ||||
STRING | OB01G34420.1 | 1e-130 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1690 | 36 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 8e-29 | cytokinin response factor 4 |