PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00897.1.g00190.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 420aa    MW: 44978.1 Da    PI: 7.6491
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00897.1.g00190.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.98.7e-17123170148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g+WT+eEd +l+     +G+g+W+t++++ g++R++k+c++r+ +yl
  Zpz_sc00897.1.g00190.1.am.mk 123 KGPWTPEEDAKLLAFTSTHGTGNWTTVPQRAGLKRCGKSCRLRYTNYL 170
                                   79********************************************97 PP
2Myb_DNA-binding52.98.4e-17178219346
                                   SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   ++T+eE+el+v ++++lG++ W++Ia+ ++ gRt++++k++w++
  Zpz_sc00897.1.g00190.1.am.mk 178 NFTQEEEELIVTLHAMLGSR-WSLIANQLP-GRTDNDVKNYWNT 219
                                   89******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-23114174IPR009057Homeodomain-like
PROSITE profilePS5129416.727118170IPR017930Myb domain
SuperFamilySSF466896.97E-30120217IPR009057Homeodomain-like
SMARTSM007175.0E-14122172IPR001005SANT/Myb domain
PfamPF002493.8E-15123170IPR001005SANT/Myb domain
CDDcd001679.97E-11125170No hitNo description
PROSITE profilePS5129425.003171225IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-23175225IPR009057Homeodomain-like
SMARTSM007173.5E-15175223IPR001005SANT/Myb domain
CDDcd001673.28E-12178221No hitNo description
PfamPF002495.4E-15178219IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MAVPILEITA FRIPPLGAYP FNVVIVVAVA LLGVARGAVA VLNRGRGGHA FVARLHLPQH  60
VVTVRAFLLL LPLLIVGAAS ICTVTTTTTF PQRCGGLTGQ ARRRGRSPSM GRPPCCDKAS  120
VKKGPWTPEE DAKLLAFTST HGTGNWTTVP QRAGLKRCGK SCRLRYTNYL RPNLKHENFT  180
QEEEELIVTL HAMLGSRWSL IANQLPGRTD NDVKNYWNTK LSKKLRQRGI DPITHRPIAD  240
LMHSIGALAI RPPQPPQHPN TSAYLLPASP AALPLVHDVA FHAAGLLPPH QQQQQQQQVL  300
VDVDAPESSH HGQIKWSDFL ADDATAEAQQ VLGQQYHHEA VAPADGVQAS GSTAAGGGHN  360
ACTDYNAGGG GGGDDGAAAF IDAILDCDKE TGVDQLIAEL LADPAYYAGS SSSPEMDWGY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-281232257108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00897.1.g00190.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0854910.0BT085491.1 Zea mays full-length cDNA clone ZM_BFc0020H06 mRNA, complete cds.
GenBankEU9670890.0EU967089.1 Zea mays clone 299414 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001150470.11e-145uncharacterized protein LOC100284100
TrEMBLA0A3L6S2K31e-147A0A3L6S2K3_PANMI; DNA binding protein
STRINGGRMZM2G308034_P011e-144(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118743439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56110.12e-62myb domain protein 103