PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00896.1.g00010.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 156aa MW: 17857.3 Da PI: 9.5985 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 129.9 | 1.9e-40 | 48 | 156 | 2 | 108 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksg 81 pGfrFhPtdeelv++yL++kv++k+l++ e+ike+diyk++PwdLp ++++++ekewyfF+ r +ky+++ r+nr+t sg Zpz_sc00896.1.g00010.1.am.mk 48 LPGFRFHPTDEELVSFYLRRKVARKPLSV-EIIKEMDIYKHDPWDLPeASTAGGEKEWYFFCLRGRKYRNSIRPNRVTGSG 127 69***************************.89***************557777899************************* PP NAM 82 yWkatgkdkevlsk..kgelvglkktLvf 108 +Wkatg d++++s+ +g+ +glkk+Lv+ Zpz_sc00896.1.g00010.1.am.mk 128 FWKATGIDRPIYSAtsSGKSIGLKKSLVY 156 ************99888899*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-42 | 46 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 42.624 | 47 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.6E-18 | 49 | 156 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MRRWPRRWGW PPVGEGEFAR EAVSLDKVKS DGEALMAAGD GEEDDVVLPG FRFHPTDEEL 60 VSFYLRRKVA RKPLSVEIIK EMDIYKHDPW DLPEASTAGG EKEWYFFCLR GRKYRNSIRP 120 NRVTGSGFWK ATGIDRPIYS ATSSGKSIGL KKSLVY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-37 | 40 | 156 | 8 | 120 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00896.1.g00010.1.am.mk |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT055579 | 3e-94 | BT055579.1 Zea mays full-length cDNA clone ZM_BFc0046N12 mRNA, complete cds. | |||
GenBank | HQ858689 | 3e-94 | HQ858689.1 Zea mays clone UT1145 NAC transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025795725.1 | 7e-91 | transcription factor JUNGBRUNNEN 1-like | ||||
Swissprot | Q9ZVH0 | 2e-55 | FEZ_ARATH; Protein FEZ | ||||
TrEMBL | A0A2S3IHK9 | 2e-89 | A0A2S3IHK9_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7C0E4 | 2e-89 | A0A2T7C0E4_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A3L6TSA4 | 3e-90 | A0A3L6TSA4_PANMI; Transcription factor JUNGBRUNNEN 1 | ||||
STRING | Si036447m | 9e-89 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1191 | 38 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 2e-54 | NAC domain containing protein 42 |
Publications ? help Back to Top | |||
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