PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00893.1.g00160.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 319aa    MW: 34205.5 Da    PI: 7.8098
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00893.1.g00160.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.26.7e-171462148
                                    TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                                    rg+W++eEde l  +v+ +G+g +W + +++ g++R++k+c++rw++yl
  Zpz_sc00893.1.g00160.1.sm.mkhc 14 RGPWSPEEDEVLRSYVQNHGTGgNWIALPHKAGLNRCGKSCRLRWLNYL 62
                                    89*********************************************97 PP
2Myb_DNA-binding34.54.6e-1171111446
                                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                 Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                      T++Ed ++       G++ W+ Ia++++ gRt++++k++w++
  Zpz_sc00893.1.g00160.1.sm.mkhc  71 YTEQEDRIICSFYSSIGSR-WSIIASKLP-GRTDNDVKNYWNT 111
                                     69*****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.936966IPR017930Myb domain
SuperFamilySSF466893.06E-2711109IPR009057Homeodomain-like
SMARTSM007171.6E-111364IPR001005SANT/Myb domain
PfamPF002491.4E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-241569IPR009057Homeodomain-like
CDDcd001671.31E-81662No hitNo description
SMARTSM007178.8E-1167115IPR001005SANT/Myb domain
PROSITE profilePS5129414.27267117IPR017930Myb domain
PfamPF002498.4E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-2170116IPR009057Homeodomain-like
CDDcd001676.51E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MGRAPCCDKA SVKRGPWSPE EDEVLRSYVQ NHGTGGNWIA LPHKAGLNRC GKSCRLRWLN  60
YLRPDIKHGG YTEQEDRIIC SFYSSIGSRW SIIASKLPGR TDNDVKNYWN TKLKKKALSI  120
QQQQHQEYYG HHHQTGAVVR AHDRQAFAVT TPPPTQQGPC ASMMPSPASA SSAVSTVSGG  180
EACSFGAMYS SPSALQPPAL APRYVDGAVP APQQLHAPSL TEYSPAAPPP PPPQPTGGVA  240
NSWATAGGMT GLEDMFLPEL LGSGEFPHGD LFGGGFGSML LQDRAPSSLQ ELAAYHFPNA  300
QAEMWADAKA PAGLCHSLT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-26141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00893.1.g00160.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794311e-156HF679431.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB25 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021311318.11e-133uncharacterized protein LOC8068029
TrEMBLA0A0A9DFU31e-149A0A0A9DFU3_ARUDO; Uncharacterized protein
STRINGSb03g031430.11e-126(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.16e-70myb domain protein 84