PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00879.1.g00100.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 580aa    MW: 62305.8 Da    PI: 11.9718
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00879.1.g00100.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.32e-18102151255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   +y+GVr+++ +g+WvAeIr+p++   r r +lg+f tae+Aa+a+++a++ l+g
  Zpz_sc00879.1.g00100.1.am.mk 102 RYRGVRQRS-WGKWVAEIREPRK---RSRKWLGTFTTAEDAARAYDRAALLLYG 151
                                   59****999.**********954...5**********************98877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.28E-16102157No hitNo description
SuperFamilySSF541712.09E-20102159IPR016177DNA-binding domain
PfamPF008471.0E-11102150IPR001471AP2/ERF domain
PROSITE profilePS5103222.445102159IPR001471AP2/ERF domain
SMARTSM003801.5E-37102165IPR001471AP2/ERF domain
PRINTSPR003678.1E-10103114IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-29103158IPR001471AP2/ERF domain
PRINTSPR003678.1E-10125141IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
LHAHACSLYC TFSLSLRPLY LTTAPLHQAH PPRPPPPSLA RPPQRKAQHH HPSLSPFTHI  60
PAPLPRPMEP NSQQLPAATA AESSGGGGSR SRKGGPENGN FRYRGVRQRS WGKWVAEIRE  120
PRKRSRKWLG TFTTAEDAAR AYDRAALLLY GPRAHLNLTA PPPELLASAQ RASSNAHSST  180
SAPPPLRPIL PRPAVASTNQ RSPAGFQHHH HHQQQVQLHL LAPQLPAQPP PPLYYPSTAT  240
ASTVTTTAQP QEPAVAPLSM APLASASVTE EQALTPDEAA AAAGKQSSGS CRRERGASRL  300
RRPVWSRGCV HASPRGIRDT TPESGVRPVP IAACLPAAVR YGNRRARSSD PLGRRSIASP  360
SSRSPVDRSV DISSLPPPLR SCAFFPRTDG HLFRDVPAHA ARQLTSLPVD RRSACVQDGK  420
SSGARDGAAT YSVLHPDGSI QVMDNRRSGR AGNDCGTTRR ALGTCTQRRD RPIGQVKPAL  480
CTGGNRDVEH KNAATRAGTN QRPRTATRGG RARDDGRNRS RTRETQRRPR RVTAPAAAIT  540
TAAASGTGHS EGRENARNPA QTASHEPTNA RTNQLTSLAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-16103158662ATERF1
3gcc_A4e-16103158662ATERF1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00674SELEXTransfer from GRMZM2G093595Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00879.1.g00100.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1254903e-78AY125490.1 Zea mays AP2 domain transcription factor (abi4) gene, complete cds.
GenBankBT0698383e-78BT069838.1 Zea mays full-length cDNA clone ZM_BFb0287E16 mRNA, complete cds.
GenBankEU9412363e-78EU941236.1 Zea mays clone 1419729 mRNA sequence.
GenBankKJ7275513e-78KJ727551.1 Zea mays clone pUT5411 AP2-EREBP transcription factor (EREB164) mRNA, partial cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133032632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40220.14e-21ERF family protein