PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G093595_P01 | ||||||||
Common Name | abi4, EREB164, LOC100384333, Zm.126261 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ERF | ||||||||
Protein Properties | Length: 248aa MW: 26797.8 Da PI: 8.7705 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60 | 5.7e-19 | 41 | 90 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+WvAeIr+p++ r r +lg+f tae+Aa+a+++a++ l+g GRMZM2G093595_P01 41 RYRGVRQRS-WGKWVAEIREPRK---RSRKWLGTFATAEDAARAYDRAALLLYG 90 59****999.**********954...5**********************98877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 22.379 | 41 | 98 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.82E-21 | 41 | 97 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 9.0E-38 | 41 | 104 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-12 | 41 | 89 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.81E-18 | 41 | 96 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 6.1E-30 | 41 | 97 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-10 | 42 | 53 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-10 | 64 | 80 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006970 | Biological Process | response to osmotic stress | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0009744 | Biological Process | response to sucrose | ||||
GO:0009749 | Biological Process | response to glucose | ||||
GO:0010119 | Biological Process | regulation of stomatal movement | ||||
GO:0010353 | Biological Process | response to trehalose | ||||
GO:0010449 | Biological Process | root meristem growth | ||||
GO:0010896 | Biological Process | regulation of triglyceride catabolic process | ||||
GO:0031930 | Biological Process | mitochondria-nucleus signaling pathway | ||||
GO:0032880 | Biological Process | regulation of protein localization | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048316 | Biological Process | seed development | ||||
GO:0048527 | Biological Process | lateral root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MEASNNESAP TAEAAAGSGP AGGEGRKGKA PKGGPENGKF RYRGVRQRSW GKWVAEIREP 60 RKRSRKWLGT FATAEDAARA YDRAALLLYG PRAHLNLTSP PPPTLAAPRS HPHSSATSSA 120 PPALRPLLPR PPLHQLSSDG APAPDFHYHN QFQRRLLPQP TPTLYYANTA TASTVTTSVP 180 TRVAVPQEPA IAPAVGSSTS LQEPQVGTPE EARGEAGWDY NGGEEEDYAA ALLWDEPEPF 240 FWFDVFLK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-16 | 42 | 97 | 6 | 62 | ATERF1 |
3gcc_A | 2e-16 | 42 | 97 | 6 | 62 | ATERF1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G093595 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00674 | SELEX | 26531826 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G093595_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY125490 | 0.0 | AY125490.1 Zea mays AP2 domain transcription factor (abi4) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008649551.1 | 1e-178 | ethylene-responsive transcription factor ABI4 | ||||
TrEMBL | Q8L7W9 | 1e-177 | Q8L7W9_MAIZE; AP2 domain transcription factor | ||||
STRING | GRMZM2G093595_P01 | 1e-178 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13303 | 26 | 32 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40220.1 | 1e-20 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G093595_P01 |
Entrez Gene | 100384333 |
Publications ? help Back to Top | |||
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