PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00856.1.g00320.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 353aa    MW: 40063 Da    PI: 9.2
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00856.1.g00320.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1661.3e-51481762128
                           NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksg 81 
                                    pGfrFhPtdeelv++yL++kv++k+l++ e+ike+diyk++PwdLp ++++++ekewyfF+ r +ky+++ r+nr+t sg
  Zpz_sc00856.1.g00320.1.am.mk  48 LPGFRFHPTDEELVSFYLRRKVARKPLSV-EIIKEMDIYKHDPWDLPkASTAGGEKEWYFFCLRGRKYRNSIRPNRVTGSG 127
                                   69***************************.89***************556667899************************* PP

                           NAM  82 yWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                   +Wkatg d++++s+  +g+ +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  Zpz_sc00856.1.g00320.1.am.mk 128 FWKATGIDRPIYSAtsSGKSIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 176
                                   ************99888899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100555.9347203IPR003441NAC domain
SuperFamilySSF1019411.07E-5647203IPR003441NAC domain
PfamPF023654.2E-2549176IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MRRWPRRWGW PPVGEGEFAR EAVSLDKVKS DGEALMAAGD GEEDDVVLPG FRFHPTDEEL  60
VSFYLRRKVA RKPLSVEIIK EMDIYKHDPW DLPKASTAGG EKEWYFFCLR GRKYRNSIRP  120
NRVTGSGFWK ATGIDRPIYS ATSSGKSIGL KKSLVYYRGS AGKGTKTDWM MHEFRLPMAA  180
AANSASPSMQ EAEVWTICRI FKRNITYRRQ QQQQQVWRQP AAAGSNTPPP AYLSSNNGSF  240
ESDGSRDEYM NRLPVTAPGI SHHQHVSSHQ VNMLNAGSSC FLRDSLHSQQ WFNLNSLTVP  300
EQKPQVTPAA MTIAFQQNHA ANEFSRDGYL EEIARFMEIS DPTSTAFYDC RYA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A5e-494920422169NAC domain-containing protein 19
3swm_B5e-494920422169NAC domain-containing protein 19
3swm_C5e-494920422169NAC domain-containing protein 19
3swm_D5e-494920422169NAC domain-containing protein 19
3swp_A5e-494920422169NAC domain-containing protein 19
3swp_B5e-494920422169NAC domain-containing protein 19
3swp_C5e-494920422169NAC domain-containing protein 19
3swp_D5e-494920422169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00856.1.g00320.1.am.mk
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0735391e-146AK073539.1 Oryza sativa Japonica Group cDNA clone:J033041C24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981565.10.0transcription factor JUNGBRUNNEN 1
SwissprotQ9SK552e-81NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLK4AC400.0K4AC40_SETIT; Uncharacterized protein
STRINGSi036447m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119138129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.12e-74NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]