PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00793.1.g00140.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 229aa MW: 23902.9 Da PI: 9.0987 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.3 | 1.2e-20 | 29 | 80 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++y+GVr ++ +gr++AeIrdp k+ r++lg+++taeeAa+a++aa+++++g+ Zpz_sc00793.1.g00140.1.sm.mk 29 PHYRGVRKRP-WGRFAAEIRDPA---KKSRVWLGTYDTAEEAARAYDAAAREFRGA 80 68********.**********83...36*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.1E-14 | 29 | 79 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.22E-19 | 29 | 88 | No hit | No description |
SMART | SM00380 | 8.7E-38 | 30 | 93 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.408 | 30 | 87 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-32 | 30 | 87 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-22 | 30 | 88 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.6E-11 | 31 | 42 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-11 | 53 | 69 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MALKTAEKTP VSPATGLGLG VGGGVGMGPH YRGVRKRPWG RFAAEIRDPA KKSRVWLGTY 60 DTAEEAARAY DAAAREFRGA KAKTNFPYGS SQCPAPAGAG SPSSNCTVDS SGRGCGAQAP 120 MQAMPLPPSL DHDLFHRTAA GIRFPFKGFP VALPAPNPYF FYEQAAAAAA AVSGYRMLKV 180 APPVTVAAVA QSDSDSSSVV DHTPSPPAAT TKKEAAFDLD LNWPPPEEN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-22 | 28 | 87 | 3 | 63 | ATERF1 |
3gcc_A | 2e-22 | 28 | 87 | 3 | 63 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00793.1.g00140.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004970251.1 | 4e-97 | ethylene-responsive transcription factor 4 | ||||
TrEMBL | K3XLF6 | 9e-96 | K3XLF6_SETIT; Uncharacterized protein | ||||
STRING | Si002729m | 1e-96 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3846 | 31 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 3e-20 | erf domain protein 9 |