PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00633.1.g00240.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 316aa    MW: 32915.4 Da    PI: 7.5341
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00633.1.g00240.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY57.13.6e-18116173159
                                   ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                                   ldDg+ WrKYGqK+++++e+pr    Ct+    gC+++k+v+ s+++p+  ++ Y geH+++
  Zpz_sc00633.1.g00240.1.sm.mk 116 LDDGHGWRKYGQKSIQDAENPR----CTHMpdqGCKARKQVQVSDTNPSEYVVSYFGEHTCR 173
                                   58*******************6....9998888**************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-19106175IPR003657WRKY domain
SuperFamilySSF1182901.06E-18110175IPR003657WRKY domain
PROSITE profilePS5081116.972111175IPR003657WRKY domain
SMARTSM007748.3E-28116174IPR003657WRKY domain
PfamPF031062.6E-17117173IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MASSGSSGPS GDRSPVPPEV VNDLLGVRQS AAMLQAMFHG SPTAERELVD GMMTKVTSAL  60
SALNTSGASS SVGRRGSSGG GSRNRAGASV AGPHRRSTVR RRTLSPFKET VTTTKLDDGH  120
GWRKYGQKSI QDAENPRCTH MPDQGCKARK QVQVSDTNPS EYVVSYFGEH TCRDPSTVPI  180
VIEAAADAST NCANFISFGR PTTTTGAAHA VPPHRQQAVA PTMMLSRFAG YSSSLPAAQE  240
RCGSEEAISG IPPAEQLGAV VGSSSTGTTM GSAPEYYHST GRCIDPGSFP SSPSSLGGFM  300
GSFGSFGDDD LFPFDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-20110173269OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00633.1.g00240.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958704.11e-77probable WRKY transcription factor 38
TrEMBLA0A3L6QUJ99e-77A0A3L6QUJ9_PANMI; Putative WRKY transcription factor 38
STRINGSi030395m5e-77(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125272837
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.12e-18WRKY DNA-binding protein 46