PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00623.1.g00160.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | WRKY | ||||||||
Protein Properties | Length: 496aa MW: 53168.6 Da PI: 6.8601 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 81.9 | 6.5e-26 | 120 | 181 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +dDg +WrKYGqKe+ g+++pr+YYrCt++ gC ++k+v+r++edp+++++ Y g H+++ Zpz_sc00623.1.g00160.1.am.mk 120 VDDGRSWRKYGQKEILGAKYPRAYYRCTHRhtqGCAATKQVQRTDEDPELFDVFYVGAHTCR 181 58***************************98999*************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 21.345 | 115 | 183 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 8.1E-26 | 117 | 181 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.29E-23 | 118 | 182 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.2E-36 | 120 | 182 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.8E-25 | 121 | 181 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 496 aa Download sequence Send to blast |
MESIDSSGGS RLLAVTELSH IKELAKQLEE QLGGSRDLCK HLASQIFSLT ERSIGIITCC 60 SDFGGARKRS ATDAGLAAAT PGSLGQLADA PFKTTKKRKM MEKMKSQVRV SSGGGCETPV 120 DDGRSWRKYG QKEILGAKYP RAYYRCTHRH TQGCAATKQV QRTDEDPELF DVFYVGAHTC 180 RVHNTVADEA ASATPPPDQH NPDAHSLQHN LTVKTEEGLA VAGEPQGWEW DATAPFGMSA 240 TPASLCLAAE SCPFSAPSTS DNRGVLSPAS SELNHAPSFP TFDAGEWRAQ SELQGVVSAL 300 VVAGTPPAPD CMDGTDELLD DFDVSFFLAA RARAQRSTIR RWETGFPTRE VPIAIAPAGR 360 PSVRDADSSG SPHLTAGRVC GRRGSASPPG RKIPRPCFPT PRRYGGVELT ASARENPRFG 420 RACGGDHPPG PDVTLPDLPH VTLKLDRDRL GTITYVANLA VPPTQLDLDR LGIAHEPRTY 480 VQAPEPEETK ALPASC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 1e-22 | 120 | 181 | 8 | 69 | OsWRKY45 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00623.1.g00160.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP095406 | 4e-37 | FP095406.1 Phyllostachys edulis cDNA clone: bphylf046n10, full insert sequence. | |||
GenBank | FP097435 | 4e-37 | FP097435.1 Phyllostachys edulis cDNA clone: bphylf045f19, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025800891.1 | 1e-112 | probable WRKY transcription factor 30 | ||||
TrEMBL | A0A2S3GYW5 | 1e-111 | A0A2S3GYW5_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ba02545.1.p | 1e-101 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1086 | 38 | 131 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24110.1 | 1e-29 | WRKY DNA-binding protein 30 |