PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00623.1.g00140.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 309aa    MW: 33188.1 Da    PI: 6.7918
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00623.1.g00140.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.42.6e-27126187159
                                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                                     +dDg++WrKYGqK++ g+++pr+YYrCt++   gC + k+v+r++edp++++++Y g+H++ 
  Zpz_sc00623.1.g00140.1.sm.mkhc 126 VDDGHSWRKYGQKDILGAKHPRGYYRCTHRhtqGCAAMKQVQRTDEDPELFDVIYLGTHTCA 187
                                     59***************************98999*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.964121189IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.4E-27122187IPR003657WRKY domain
SuperFamilySSF1182906.02E-25123188IPR003657WRKY domain
SMARTSM007742.2E-38126188IPR003657WRKY domain
PfamPF031063.4E-26127186IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MEGGVYCGGG SRLVVMELSH IKELVTKLEV HLGESPDLCK RLASQIFSLT ERSIGIITSS  60
SSGFDGGRKR SAEDASLGSA TPSPLSDVVV DAPFKNNKKR KMMEKRKHQV RVSPAGGGGG  120
GETTPVDDGH SWRKYGQKDI LGAKHPRGYY RCTHRHTQGC AAMKQVQRTD EDPELFDVIY  180
LGTHTCAVHK TAAAQATQLP EHNPDARSLL QNLSASLTVM TEGLAVAGGP QGWSASAPFF  240
RFSSTLLAPE RRSLFSVPST SENWGVSPAT SDSNHVASFH PFDAAAGDAE PALDIDEDFL  300
NIDISSYFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-23126186868OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00623.1.g00140.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800891.11e-116probable WRKY transcription factor 30
TrEMBLA0A1E5WLZ71e-119A0A1E5WLZ7_9POAL; Putative WRKY transcription factor 53
STRINGPavir.Ba02545.1.p1e-115(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.23e-32WRKY family protein