PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00619.1.g00030.1.sm.mkhc

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 371aa MW: 40293.5 Da PI: 7.2124

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00619.1.g00030.1.sm.mkhc	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	173.2	7.6e-54	22	149	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknrat 78 lppGfrFhPtdeel+++yL++k+++ ++ + +++ e+d++++ePwdLp ++ ++ kewyfF+ +d+ky+tg+r+nrat Zpz_sc00619.1.g00030.1.sm.mkhc 22 LPPGFRFHPTDEELITHYLARKAADPRFAA-QAVGEADLNRCEPWDLPaRAGATWGKEWYFFCIKDRKYPTGQRTNRAT 99 79***********************999.88***********434444678****************** PP NAM 79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +sgyWkatgkd+e+++ ++ lvg+kktLvfy+grapkg kt Wvmheyrle Zpz_sc00619.1.g00030.1.sm.mkhc 100 ESGYWKATGKDREIFR-GKVLVGMKKTLVFYTGRAPKGGKTGWVMHEYRLE 149 ************.99****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.89E-63	9	183	IPR003441	NAC domain
PROSITE profile	PS51005	58.702	22	183	IPR003441	NAC domain
Pfam	PF02365	3.3E-29	23	148	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MEHDAHHHHL QHQQQQAMEM ELPPGFRFHP TDEELITHYL ARKAADPRFA AQAVGEADLN 60 RCEPWDLPAR AGATWGKEWY FFCIKDRKYP TGQRTNRATE SGYWKATGKD REIFRGKVLV 120 GMKKTLVFYT GRAPKGGKTG WVMHEYRLEG ENSAKGAGSS NLFLSIKSAT SKDEWVLCRV 180 FKKNIEPPSV TGGKRPGSST FMETADVGPS MSMADELAAA CALPRLMDVS GSGSGVPTSL 240 SVAAASIDQL PPPAHVTCFS NALEAQFLNP PFILPSAPAL ASAAAHGAVA ADHLTMASAS 300 APFLARVQMQ YDGGMVHKLL QGDGGWYGKL GERERLSGAS QDTGVTSEVN PAEISSSRQH 360 MMNSDASLWD F

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MEHDAHHHHL QHQQQQAMEM ELPPGFRFHP TDEELITHYL ARKAADPRFA AQAVGEADLN  60
RCEPWDLPAR AGATWGKEWY FFCIKDRKYP TGQRTNRATE SGYWKATGKD REIFRGKVLV  120
GMKKTLVFYT GRAPKGGKTG WVMHEYRLEG ENSAKGAGSS NLFLSIKSAT SKDEWVLCRV  180
FKKNIEPPSV TGGKRPGSST FMETADVGPS MSMADELAAA CALPRLMDVS GSGSGVPTSL  240
SVAAASIDQL PPPAHVTCFS NALEAQFLNP PFILPSAPAL ASAAAHGAVA ADHLTMASAS  300
APFLARVQMQ YDGGMVHKLL QGDGGWYGKL GERERLSGAS QDTGVTSEVN PAEISSSRQH  360
MMNSDASLWD F

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-52	9	184	3	166	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-52	9	184	3	166	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-52	9	184	3	166	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-52	9	184	3	166	NO APICAL MERISTEM PROTEIN
4dul_A	4e-52	9	184	3	166	NAC domain-containing protein 19
4dul_B	4e-52	9	184	3	166	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00619.1.g00030.1.sm.mkhc

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT065898	1e-128	BT065898.1 Zea mays full-length cDNA clone ZM_BFb0063K15 mRNA, complete cds.
GenBank	KJ728021	1e-128	KJ728021.1 Zea mays clone pUT6157 NAC transcription factor (NAC40) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025796322.1	1e-169	NAC domain-containing protein 92-like
TrEMBL	A0A3L6RW05	1e-171	A0A3L6RW05_PANMI; NAC domain-containing protein 92-like
STRING	Si017567m	1e-163	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2730	37	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	7e-82	NAC domain containing protein 100