PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00615.1.g00190.1.sm.mkhc

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Trihelix

Protein Properties

Length: 541aa MW: 60447.8 Da PI: 6.8253

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00615.1.g00190.1.sm.mkhc	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	59.3	9.7e-19	252	313	25	85
trihelix 25 klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 +kk++W+++sk+m +rg+ +sp+qC++k+++lnkryk+++++ +++ t++++++ +++ + Zpz_sc00615.1.g00190.1.sm.mkhc 252 MQKKGKWKAISKVMGKRGCLVSPQQCEDKFNDLNKRYKRLTDILGRGtTCKVVEKPELLEGM 313 49*********************************************779999988887766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.6E-14	253	339	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 541 aa Download sequence Send to blast
MARQAVATSA RGAAVDDGFL PILVLPVAAE RAELPERSGR DSGGRGGDVA RRGTPPPTVR 60 GRGDAEEVEA PPPSADEVLT VRLVRRRRFL PAVKNGPRQP PSRARAHSCA TDWVSLVRDW 120 PACPYPLPWR RSPAQRRRLF QHPPVLPAGS STRLPLATLV QQQQPTTPLL ALVDWRSAAA 180 LVTDHDQLSE FQFGEHGRAD HHQHHDTKNS MSDDEDHGVN EDATGSHTGK VSYTGEDPGA 240 DLGGGRRNCA MMQKKGKWKA ISKVMGKRGC LVSPQQCEDK FNDLNKRYKR LTDILGRGTT 300 CKVVEKPELL EGMNISDKMK DDARKILNSK HLFYEEMCSY HNNNRISLPE DPELQHSLQL 360 ALMCKEEYDI RKRASGDADE DDHSADTDDE EENDEEHLSM HVNKGAPTMQ KRMRHTVDQE 420 DIGFGNSSSS HGYSRRSDPH SITLDVSKSF PDGTNLALVQ KDLAIQSAEI EKQRMQIEAE 480 ALELAKQRLK WEQFSKKKDR ELENMRLENE QMKLENKCLE LERGVGACSA EVGPLASQRP 540 P

Sequence ? help Back to Top

Protein Sequence Length: 541 aa Download sequence Send to blast

MARQAVATSA RGAAVDDGFL PILVLPVAAE RAELPERSGR DSGGRGGDVA RRGTPPPTVR  60
GRGDAEEVEA PPPSADEVLT VRLVRRRRFL PAVKNGPRQP PSRARAHSCA TDWVSLVRDW  120
PACPYPLPWR RSPAQRRRLF QHPPVLPAGS STRLPLATLV QQQQPTTPLL ALVDWRSAAA  180
LVTDHDQLSE FQFGEHGRAD HHQHHDTKNS MSDDEDHGVN EDATGSHTGK VSYTGEDPGA  240
DLGGGRRNCA MMQKKGKWKA ISKVMGKRGC LVSPQQCEDK FNDLNKRYKR LTDILGRGTT  300
CKVVEKPELL EGMNISDKMK DDARKILNSK HLFYEEMCSY HNNNRISLPE DPELQHSLQL  360
ALMCKEEYDI RKRASGDADE DDHSADTDDE EENDEEHLSM HVNKGAPTMQ KRMRHTVDQE  420
DIGFGNSSSS HGYSRRSDPH SITLDVSKSF PDGTNLALVQ KDLAIQSAEI EKQRMQIEAE  480
ALELAKQRLK WEQFSKKKDR ELENMRLENE QMKLENKCLE LERGVGACSA EVGPLASQRP  540
P

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00615.1.g00190.1.sm.mkhc

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025807496.1	0.0	uncharacterized protein LOC112885984
TrEMBL	A0A0A9QSA2	0.0	A0A0A9QSA2_ARUDO; Uncharacterized protein
STRING	Pavir.J39826.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2920	38	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	9e-71	sequence-specific DNA binding transcription factors