PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00615.1.g00020.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 371aa    MW: 40122.2 Da    PI: 6.9212
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00615.1.g00020.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.4e-19192241255
                             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                                     +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+ ++aa+++++g
  Zpz_sc00615.1.g00020.1.sm.mkhc 192 RYRGVRRRP-WGKWAAEIRDP-----HraARVWLGTFDTAEAAARSYDAAALRFRG 241
                                     7********.**********7.....338************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.8E-13192241IPR001471AP2/ERF domain
SMARTSM003801.8E-34192255IPR001471AP2/ERF domain
PROSITE profilePS5103226.015192249IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-31192251IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-22192251IPR016177DNA-binding domain
PRINTSPR003674.0E-11193204IPR001471AP2/ERF domain
CDDcd000189.52E-16200251No hitNo description
PRINTSPR003674.0E-11215231IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MDQDHTRRAL FMYKERNHSP KRFTYLPTCV RLESRTETAS AAWLFMCDAA VEDPGEQRRR  60
LLAAGEDPVM SLSPPALSRS RQAQEMSAMV SALARVVAGS APPAATSAAP VSAEEPPWWP  120
WEELDDAPPS ALVLNAHGAA RQPHEQHWPP APAAAAGASS SWQHRVSTKD ELLSPPSGGS  180
AAGERSAPRS RRYRGVRRRP WGKWAAEIRD PHRAARVWLG TFDTAEAAAR SYDAAALRFR  240
GTRAKLNFPE SATLPSSPPT PQQQHLPPAA SRTSPPPSRP EALLESHSQQ QALPGAEAGD  300
YAEYARFLQD AGDGEPGGSS STSLSVSPAP FSFGAEREGG GSGSHDPATS PSAHWYGGTY  360
PQWRWGWDQE D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-20189249263ATERF1
3gcc_A2e-20189249263ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00615.1.g00020.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808413.13e-69ethylene-responsive transcription factor ABR1-like
TrEMBLA0A2T7E5K02e-75A0A2T7E5K0_9POAL; Uncharacterized protein
STRINGPavir.Cb02005.1.p3e-52(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98942540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.13e-19ethylene response factor 110