PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00565.1.g00050.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 167aa    MW: 17853.9 Da    PI: 9.5635
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00565.1.g00050.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.21.7e-1673107135
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                   C +C + kT +WR gp g+ktLCnaCG++y++ +l
  Zpz_sc00565.1.g00050.1.am.mk  73 CPHCASEKTQQWRTGPLGPKTLCNACGVRYKSGRL 107
                                   9******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577168.08E-1266118No hitNo description
SMARTSM004012.2E-1467117IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.106.5E-1271105IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011410.10671103IPR000679Zinc finger, GATA-type
CDDcd002024.38E-972115No hitNo description
PROSITE patternPS0034407398IPR000679Zinc finger, GATA-type
PfamPF003201.5E-1473107IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MASEWEAVDL GMGLVHHHTT NTTTMPPAPS PSSINHQAWQ RSKNKQNLPA APAAGGGGDD  60
PNSRSEDGGV RRCPHCASEK TQQWRTGPLG PKTLCNACGV RYKSGRLVPE YRPAATPRSC  120
SRSTPTRTAR SWSCAARRSS STSAAPHPLL HHRHSETTAC ADLPCPA
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00565.1.g00050.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7228422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45050.12e-28GATA transcription factor 2