PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00557.1.g00110.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family AP2
Protein Properties Length: 430aa    MW: 47712.9 Da    PI: 6.0338
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00557.1.g00110.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.41.1e-1043102255
                             AP2   2 gykGVrwdkkrgrWvAeIrd.pseng.....kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                      y+GV++++++gr++A+++d  ++n      k+ k  + g +  +e Aa+a++ a++k++g
  Zpz_sc00557.1.g00110.1.sm.mkhc  43 AYRGVTRHRWTGRFEAHLWDrDTWNRepqakKKkKGKQ-GAYEDEEAAARAHDLAALKYWG 102
                                     69******************877788899864446666.777777**************98 PP
2AP233.78.9e-11182225955
                             AP2   9 dkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                     ++ +grW+A+I  +     +k+ +lg++ t eeAa a++ a+ + +g
  Zpz_sc00557.1.g00110.1.sm.mkhc 182 HHHNGRWEARIGRVLG---NKYLYLGTYATQEEAAVAYDIAAIEHRG 225
                                     5679******988422...5**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.2E-1342111IPR016177DNA-binding domain
SMARTSM003806.0E-1743116IPR001471AP2/ERF domain
PfamPF008471.3E-843102IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.1E-1243110IPR001471AP2/ERF domain
PROSITE profilePS5103218.17643110IPR001471AP2/ERF domain
PROSITE profilePS5103214.71146233IPR001471AP2/ERF domain
SMARTSM003809.2E-20182239IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-14182235IPR016177DNA-binding domain
PfamPF008471.5E-5182224IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.4E-14182233IPR001471AP2/ERF domain
CDDcd000186.39E-19183235No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MARPRPNDEE SSTAGAVRAK PKPKRARKGA LLPECRPSQR SSAYRGVTRH RWTGRFEAHL  60
WDRDTWNREP QAKKKKKGKQ GAYEDEEAAA RAHDLAALKY WGPGTVLNFP LCSYDDELKE  120
MEGQSREEYV GSVRRKSSGF SRGVSKYRGV ARFSSCKLAL SIGSPAELTN NLQFISLALM  180
MHHHNGRWEA RIGRVLGNKY LYLGTYATQE EAAVAYDIAA IEHRGLNAVT NFDISHYVNW  240
HRRRRRRGLG EQDGLDATEL PNDLTEHARA TADLDETEVA VAAAFLEADH LQHQDHIADS  300
YTEQVPDDQE MMLDQLLLLH SPRFEEIMEQ VSAAASATTT ESNASSSPSP SACTSSSAPS  360
SLSQPSPKRQ PEPSSSAAAR CGFPDDVQTY FECDDDGIGF AFAEVDTFLF GDLGAYAAPM  420
FQCDLDVFVS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1241246RRRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00557.1.g00110.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973570.11e-133AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLK3YHX31e-134K3YHX3_SETIT; Uncharacterized protein
STRINGSi013842m1e-134(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33193678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.23e-69AP2 family protein