PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00550.1.g00250.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 475aa    MW: 51802.5 Da    PI: 10.5947
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00550.1.g00250.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63.1e-18255303153
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkl 53 
                                   ++++GVr+++ +g+Wv+eIr+p        +r++lg+f taeeAa+a+++a+  +
  Zpz_sc00550.1.g00250.1.am.mk 255 KKFRGVRQRH-WGSWVSEIRHP-----LlkRRVWLGTFETAEEAAQAYDEAAVLM 303
                                   59*******9.**********8.....334*********************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.51E-28255312No hitNo description
SMARTSM003801.2E-36256319IPR001471AP2/ERF domain
PfamPF008475.9E-11256300IPR001471AP2/ERF domain
PROSITE profilePS5103221.219256313IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-31256313IPR001471AP2/ERF domain
SuperFamilySSF541716.15E-19256314IPR016177DNA-binding domain
PRINTSPR003679.9E-10257268IPR001471AP2/ERF domain
PRINTSPR003679.9E-10279295IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MRTPRGPWLV PRIRIRVYSY RREKVHTPEN RPCSVEETAG AEMSSRITFP CRTSARQQRP  60
CTHATASCRH VVVCRRGARR SKRAADAPVN LHHLNESGAP GGQRRGHLIC PAYVLGSPRQ  120
PTTPTCLHFT WKSSSCVYGD RSERAAAASE GSNCQELTDT RIQVEPCSKS TRRSLNYRSR  180
RAAGHGQRTS RAIDPASTFY GAPAAMDGLI GAGGYATRYS SPTARPVTGP DSLLFFRFLP  240
PVFPLHPKTS SRSKKKFRGV RQRHWGSWVS EIRHPLLKRR VWLGTFETAE EAAQAYDEAA  300
VLMSGRNAKT NFSIPRSATG ELAPVPAARY STRGGVGSSS AAGGSNNLSQ ILSAKLRKCC  360
KTPSPSLTCL RLDPEKSHIG VWQKRAGARA DSSWVMTVEL NKEVTAAATS SREEPALSYG  420
ATTTPTSTST TTDSPPAMDD EERIALQMIE ELLGRSGPVD HSHGMLHGVE GSLVI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-14255321470ATERF1
3gcc_A6e-14255321470ATERF1
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00550.1.g00250.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37173876
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15360.14e-58ERF family protein