PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00540.1.g00030.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GATA | ||||||||
Protein Properties | Length: 195aa MW: 21461.1 Da PI: 8.7819 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 60.8 | 1.7e-19 | 91 | 125 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ C++t+Tp+WR+gp g+++LCnaCG++yrkk++ Zpz_sc00540.1.g00030.1.am.mk 91 CVECRATTTPMWRSGPTGPRSLCNACGIRYRKKRR 125 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 12.848 | 85 | 121 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 2.5E-15 | 85 | 138 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.76E-13 | 88 | 127 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 5.5E-16 | 88 | 138 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 4.33E-13 | 90 | 126 | No hit | No description |
Pfam | PF00320 | 3.1E-17 | 91 | 125 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 91 | 116 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MISFSDDDGT CRSKSEFTHK QSFHRRSETP RRLFSPPSVI PTSLPAAEPR KDPPAVDREP 60 PTDHPAPPPP MASADHKIAG IGVPEEGRRS CVECRATTTP MWRSGPTGPR SLCNACGIRY 120 RKKRRQELGL DQKQVQQQHQ GEIKTEVKES NSNSSSGSSN NLEVVQERKL LMGVEEAAFL 180 LMTLSSSSTS TLLHG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00540.1.g00030.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021310786.1 | 9e-57 | GATA transcription factor 23-like | ||||
TrEMBL | A0A2T7DM74 | 4e-56 | A0A2T7DM74_9POAL; Uncharacterized protein | ||||
STRING | Sb03g013700.1 | 4e-56 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6721 | 28 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26930.1 | 5e-18 | GATA transcription factor 23 |