PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00519.1.g00060.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 131aa    MW: 15025.4 Da    PI: 10.757
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00519.1.g00060.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA30.26.3e-101145135
                          GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                                  C +C + +Tp+WR     ++tLCnaC ++ r  g+
  Zpz_sc00519.1.g00060.1.am.mk 11 CLQCDSAETPQWRLRLLRQITLCNACDVRLRADGV 45
                                  899***********************999998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.47E-9553No hitNo description
SMARTSM004012.3E-5556IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.147559IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.5E-8659IPR013088Zinc finger, NHR/GATA-type
PfamPF003207.0E-81145IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MVRPTKKMKR CLQCDSAETP QWRLRLLRQI TLCNACDVRL RADGVRRETE QRAAQRRARH  60
AAACGAGLTG SWQALVKDHQ PVTLFLQVDL HRRCGYRAVH QVRGGVDQQV AEPVVAMPWA  120
TMNEQHREIF I
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00519.1.g00060.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2494125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45050.16e-08GATA transcription factor 2