PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00509.1.g00320.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 362aa    MW: 39613.1 Da    PI: 6.8309
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00509.1.g00320.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.42.8e-171966148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  rg+WT eEd ll ++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
  Zpz_sc00509.1.g00320.1.am.mk 19 RGPWTLEEDNLLMNYIACHGEGRWNLLARCSGLKRTGKSCRLRWLNYL 66
                                  89********************************************97 PP
2Myb_DNA-binding51.72e-1672115146
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Zpz_sc00509.1.g00320.1.am.mk  72 RGNLTSEEQLLILELHSKWGNR-WSRIAQHLP-GRTDNEIKNYWRT 115
                                   7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.1991466IPR017930Myb domain
SuperFamilySSF466891.83E-3016113IPR009057Homeodomain-like
SMARTSM007171.2E-131868IPR001005SANT/Myb domain
PfamPF002496.2E-151966IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-232073IPR009057Homeodomain-like
CDDcd001672.98E-112166No hitNo description
PROSITE profilePS5129425.42967121IPR017930Myb domain
SMARTSM007171.1E-1471119IPR001005SANT/Myb domain
PfamPF002495.3E-1572115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-2374120IPR009057Homeodomain-like
CDDcd001674.55E-1276115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009686Biological Processgibberellin biosynthetic process
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MAVASSKQRQ QEEEMELRRG PWTLEEDNLL MNYIACHGEG RWNLLARCSG LKRTGKSCRL  60
RWLNYLKPDI KRGNLTSEEQ LLILELHSKW GNRWSRIAQH LPGRTDNEIK NYWRTRVQKQ  120
ARQLRVDANS PVFRDAVRCY WMPRLLEKMA ATTAHHNSHV EPAAVPLPLH RAASIGDVMH  180
MGSSSPIHHG SQSQLHDATN VPAESGGGYQ QRYYYHEVVD PSPSTSTTSG SGSTTAAALP  240
PVPCFSEQSW VDQQCYGGGD LGARTGAFDF AALGSLGLDG LDLGPADCDY SDTTLLDYFS  300
SAYTGSAATM MMLDSSGGGT GTGNGATDDG AYYGGPTTPW RTEDLCQTTA RKLGGHQWGG  360
GI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-26161201104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00216DAPTransfer from AT1G68320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00509.1.g00320.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794270.0HF679427.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB21 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002455261.11e-142transcription factor MYB2
TrEMBLA0A1E5VU101e-142A0A1E5VU10_9POAL; Transcription factor MYB108
STRINGPavir.Ea00660.1.p1e-153(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.14e-76myb domain protein 62