PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00470.1.g00220.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Trihelix
Protein Properties Length: 388aa    MW: 41789 Da    PI: 6.9761
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00470.1.g00220.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.64.4e-1558139286
                      trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessst 78 
                                   W++  + aLi+a  e+  +l+rg+l+ p+W+ev++++ ++ g++++pk   qCk++++ l+k+yk +k+  ++       +
  Zpz_sc00470.1.g00220.1.am.mk  58 WSDGATSALIDAWGERFVALGRGSLRHPQWQEVAEVVsSRDGYSKTPKsdaQCKNRIDTLKKKYKVEKAKHNS-------S 131
                                   *************************************878899988765559**************9998886.......5 PP

                      trihelix  79 cpyfdqle 86 
                                   + yf++l+
  Zpz_sc00470.1.g00220.1.am.mk 132 WTYFHRLD 139
                                   ******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.6E-2356141No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MGDDAEASPS PSPSPSPLPV ADPVTVASAP PGHIAVAIPL RKPSPSSGGG SGGREDAWSD  60
GATSALIDAW GERFVALGRG SLRHPQWQEV AEVVSSRDGY SKTPKSDAQC KNRIDTLKKK  120
YKVEKAKHNS SWTYFHRLDE LLAPIYKPGS GSSSGARSAP PMVPPRFSFP QRTRTPLQPS  180
AVAKRRIPSP PTQPSSSSGS SDGFPPEPPS ATVANGKKPL VEEPAPANGA ESNNRAQSLR  240
ELAQAIRRFG EVYERIESSK REQELRMERE RLEAARELED QRVQFFLKMQ MELSKATDGA  300
PSATPMAAAT AIDGNGSRRA AMATDVATSS NHKVRYRSMD SRHPHTAQQP QYQHSQNNSG  360
AAAPASGNGS DTENKEDEDM EDEDEDSQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00470.1.g00220.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1206651e-119AK120665.1 Oryza sativa Japonica Group cDNA clone:J013159K02, full insert sequence.
GenBankAP0048651e-119AP004865.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0020C11.
GenBankAP0149581e-119AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126101e-119CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001170546.11e-156uncharacterized protein LOC100384564
SwissprotQ9LJG85e-35ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A0E0K1B11e-156A0A0E0K1B1_ORYPU; Uncharacterized protein
STRINGPavir.J27535.1.p1e-161(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24043069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.12e-32sequence-specific DNA binding transcription factors