PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00463.1.g00090.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 282aa    MW: 30682.5 Da    PI: 10.2743
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00463.1.g00090.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.33.8e-18106154355
                           AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   ++GVr ++ +g+++AeIrdp++   rkr +lg+f+taeeAa+ ++ a+ +l+g
  Zpz_sc00463.1.g00090.1.am.mk 106 FRGVRLRP-WGKYAAEIRDPRQ---RKRLWLGTFDTAEEAAAVYDDAAVRLKG 154
                                   8*******.**********954...5***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.0E-35105168IPR001471AP2/ERF domain
PROSITE profilePS5103222.207105162IPR001471AP2/ERF domain
PRINTSPR003672.3E-9106117IPR001471AP2/ERF domain
SuperFamilySSF541715.89E-21106164IPR016177DNA-binding domain
CDDcd000185.69E-19106164No hitNo description
PfamPF008473.5E-10106154IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.6E-29106163IPR001471AP2/ERF domain
PRINTSPR003672.3E-9128144IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MVDEICRPGG SAVMSSSDSL AAGRSRRVGL PLPHPKRVRV SFVDADATDT DCSGDEGERG  60
NRRVIEIDVQ AASVPAKRSR RALPPHVVLA RRHRAKAAGA GLRRPFRGVR LRPWGKYAAE  120
IRDPRQRKRL WLGTFDTAEE AAAVYDDAAV RLKGSQAVTN FPSSVAAAEE RVRSPRKEPR  180
PRGRPVRDAA SVARTSPQAP SPAQQQARQD DAVPSCEFEP PTSVLRHADE VAFQAFDFLY  240
GGLGELAAAA PPKAAEFEWM PWWESEDFVT SGVTPASAVT VK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-20104169470ATERF1
3gcc_A6e-20104169470ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00463.1.g00090.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1241418e-59AC124141.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0065C11, complete sequence.
GenBankAK1106138e-59AK110613.1 Oryza sativa Japonica Group cDNA clone:002-168-H06, full insert sequence.
GenBankAP0149618e-59AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126138e-59CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804895.18e-77ethylene-responsive transcription factor CRF4-like
TrEMBLA0A2T7EG764e-77A0A2T7EG76_9POAL; Uncharacterized protein
STRINGPavir.Ia04256.1.p1e-72(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131402226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.11e-17cytokinin response factor 4