PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00453.1.g00230.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 147aa    MW: 16175.9 Da    PI: 11.3179
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00453.1.g00230.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA252.6e-081144134
                          GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                                  C +C + kTp+WR      +tLCnaC +  r +g
  Zpz_sc00453.1.g00230.1.sm.mk 11 CLQCDSAKTPQWRLRLLRRSTLCNACDVWLRANG 44
                                  899***********************77666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.8E-9453No hitNo description
SMARTSM004011.6E-4556IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.097559IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.4E-9660IPR013088Zinc finger, NHR/GATA-type
PfamPF003203.9E-61144IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MMRPTKKMKR CLQCDSAKTP QWRLRLLRRS TLCNACDVWL RANGVLRETK QRAAQRRARH  60
AAACGAGLTG SEQALVKDHQ PAMLTYTVVA STVLFIKYEE EWITSSGIGG GHAMGSMAGF  120
QSGHMLRAGC KLARPPVAAI HNAQRGR
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00453.1.g00230.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2494125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45050.12e-07GATA transcription factor 2