PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00445.1.g00020.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 490aa MW: 53235.2 Da PI: 8.8338 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.3 | 5e-52 | 68 | 193 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 lppGfrFhPtdeel+++yL++kv++ + + ++ e+d++k+ePw+Lp+ +k +ekewyfF+ +d+ky+tg r+nrat++g Zpz_sc00445.1.g00020.1.am.mk 68 LPPGFRFHPTDEELITHYLARKVADPCFAA-LAVGEADLNKSEPWELPSLAKMGEKEWYFFCLKDRKYPTGLRTNRATEAG 147 79***********************99888.67***************8888899************************** PP NAM 82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 yWkatgkdk++++ ++ lvg kktLvfy+grapkgek+ Wvmheyrl Zpz_sc00445.1.g00020.1.am.mk 148 YWKATGKDKDIFR-GKVLVGSKKTLVFYTGRAPKGEKSGWVMHEYRL 193 *************.99*****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.19E-62 | 61 | 218 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.018 | 68 | 218 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-28 | 69 | 193 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 490 aa Download sequence Send to blast |
MAAPALFSAG TRYGSSRLGA NGSIELASSI LSRQKYLQLA QQHLVLLCGD QRKVKQVMEQ 60 ELHQPMELPP GFRFHPTDEE LITHYLARKV ADPCFAALAV GEADLNKSEP WELPSLAKMG 120 EKEWYFFCLK DRKYPTGLRT NRATEAGYWK ATGKDKDIFR GKVLVGSKKT LVFYTGRAPK 180 GEKSGWVMHE YRLHGKPVNG VPRALSKNEW VLCRVFKKSL PGLAPLLAAA AAAKKGAGEM 240 ARMDDMVLAH LPPLMDMSGS ATVNPEAAHV TCFSNALEGQ FFNHTVPQTA ANSGTDDHLG 300 LASSPFFPQY GQLHQGVSLV QLLESNGYDV GLADDEGKPS GLAPPPCKQG ERERLSASQD 360 TGLTSDVNAE ISSSYGPKFD QDRLWGYWHS RTVNTNTRSR GRHSQTPKPP AELDSDASSL 420 ATPALELVGF DPGLDETSYS LLACLSRQCR ATRRRRSPTG LIDGGSSARG AGASRVAVSW 480 NRSFLDGAGS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-50 | 57 | 218 | 6 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-50 | 57 | 218 | 6 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-50 | 57 | 218 | 6 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-50 | 57 | 218 | 6 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-50 | 57 | 218 | 9 | 168 | NAC domain-containing protein 19 |
3swm_B | 2e-50 | 57 | 218 | 9 | 168 | NAC domain-containing protein 19 |
3swm_C | 2e-50 | 57 | 218 | 9 | 168 | NAC domain-containing protein 19 |
3swm_D | 2e-50 | 57 | 218 | 9 | 168 | NAC domain-containing protein 19 |
3swp_A | 2e-50 | 57 | 218 | 9 | 168 | NAC domain-containing protein 19 |
3swp_B | 2e-50 | 57 | 218 | 9 | 168 | NAC domain-containing protein 19 |
3swp_C | 2e-50 | 57 | 218 | 9 | 168 | NAC domain-containing protein 19 |
3swp_D | 2e-50 | 57 | 218 | 9 | 168 | NAC domain-containing protein 19 |
4dul_A | 2e-50 | 57 | 218 | 6 | 165 | NAC domain-containing protein 19 |
4dul_B | 2e-50 | 57 | 218 | 6 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00445.1.g00020.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT060770 | 1e-167 | BT060770.2 Zea mays full-length cDNA clone ZM_BFb0046M18 mRNA, complete cds. | |||
GenBank | BT063543 | 1e-167 | BT063543.1 Zea mays full-length cDNA clone ZM_BFc0075B16 mRNA, complete cds. | |||
GenBank | BT084493 | 1e-167 | BT084493.2 Zea mays full-length cDNA clone ZM_BFb0122M24 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004975858.1 | 1e-159 | NAC domain-containing protein 92 isoform X1 | ||||
TrEMBL | A0A3G1VCF2 | 0.0 | A0A3G1VCF2_9POAL; NAC domain transcription factor | ||||
STRING | Pavir.Gb01850.1.p | 1e-160 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2730 | 37 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 2e-90 | NAC domain containing protein 100 |