PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00440.1.g00140.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 284aa    MW: 30181.5 Da    PI: 4.6239
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00440.1.g00140.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.91.3e-0934681948
                                  TTTT......-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding 19 lGgg......tWktIartmgkgRtlkqcksrwqkyl 48
                                  +G+       +W++Ia +++ gRt++++k++w+++l
  Zpz_sc00440.1.g00140.1.sm.mk 34 HGSAplrllfSWSLIAGHLP-GRTDNEIKNYWNSHL 68
                                  66557777779*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576124No hitNo description
PfamPF002491.1E-73268IPR001005SANT/Myb domain
SuperFamilySSF466894.97E-74371IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-124468IPR009057Homeodomain-like
PROSITE profilePS500906.4814568IPR017877Myb-like domain
CDDcd001672.15E-64568No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MPVTRRDWRL LDLQHGILIA TCACRRRPGS HDLHGSAPLR LLFSWSLIAG HLPGRTDNEI  60
KNYWNSHLSR RAADFRDVVV VDVDLSKLPG GGRTSRGAAA TAKGAKEKKA TGKAKEKVPL  120
PPHDATKGQA EAEDSSHSEP PTPSSQPCHT QSEEHAQASA SGVTSDGLED GPLGLSEEMV  180
SGCPGFVGPN LMTTGSDGAC MDHESGLSMN RDSVPNSGPS GDVAQELGEI KALEDWDLAG  240
LDISVDDDMW GSGSLVWDYD GMGVVLEGGQ QGELMSDLFF LDNV
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00440.1.g00140.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819210.14e-61myb-related protein P-like
TrEMBLA0A0A9JQV17e-68A0A0A9JQV1_ARUDO; Uncharacterized protein
STRINGPavir.Eb02286.1.p2e-60(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3289934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.11e-12myb domain protein 12