PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00434.1.g00110.1.sm.mkhc

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WRKY

Protein Properties

Length: 264aa MW: 28436.7 Da PI: 10.3788

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00434.1.g00110.1.sm.mkhc	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.6	2.2e-32	69	127	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct+agC v+k+ver+++d k v++ Yeg+Hnhe Zpz_sc00434.1.g00110.1.sm.mkhc 69 LDDGYRWRKYGQKVVKGNTNPRSYYKCTHAGCGVRKHVERASNDLKSVITSYEGKHNHE 127 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	5.3E-36	54	129	IPR003657	WRKY domain
SuperFamily	SSF118290	1.7E-28	61	129	IPR003657	WRKY domain
PROSITE profile	PS50811	36.013	64	129	IPR003657	WRKY domain
SMART	SM00774	3.2E-35	69	128	IPR003657	WRKY domain
Pfam	PF03106	5.0E-25	70	127	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MAKRILVPNL ARMQQLPWEA PQMGIPTMKM DVSATTNNTT STFDVAAMAS RAVREPRIIV 60 QTTSEVDILD DGYRWRKYGQ KVVKGNTNPR SYYKCTHAGC GVRKHVERAS NDLKSVITSY 120 EGKHNHEVPA ARNSRGHPSS AQEGCGNLHQ MPQLAQASIV QFSGVPAFGS VSLPAQLGAG 180 SGGFCFGMFP PGMAVPVPPG AAVPAVPMRV PRHTSAMQHC PGIMLPRGEV KVNPKEQSSL 240 PVATRSGTAT YHQIMGRLPQ GPQM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-37	60	130	8	78	Probable WRKY transcription factor 4
2lex_A	2e-37	60	130	8	78	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269\|PubMed:21316593}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00434.1.g00110.1.sm.mkhc

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025820553.1	1e-110	probable WRKY transcription factor 2
Refseq	XP_025820554.1	1e-110	probable WRKY transcription factor 2
Refseq	XP_025820555.1	1e-110	probable WRKY transcription factor 2
Refseq	XP_025820556.1	1e-110	probable WRKY transcription factor 2
Swissprot	Q9FG77	5e-46	WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBL	A0A2T7D8Y4	1e-110	A0A2T7D8Y4_9POAL; Uncharacterized protein
STRING	Pavir.J13787.1.p	1e-107	(Panicum virgatum)
STRING	Si013374m	1e-106	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2075	38	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56270.1	9e-47	WRKY DNA-binding protein 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ueda M, et al. Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote. Genes Dev., 2017. 31(6): p. 617-627 [PMID:28404632] Lei R, et al. Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function. Plant J., 2017. 91(6): p. 962-976 [PMID:28635025]