PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00425.1.g00260.1.sm.mkhc

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TALE

Protein Properties

Length: 701aa MW: 73848 Da PI: 6.6693

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00425.1.g00260.1.sm.mkhc	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.1	1.7e-09	408	445	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + Zpz_sc00425.1.g00260.1.sm.mkhc 408 FEHflHPYPKDSDKMMLAKQTGLTRSQVSNWFINARVR 445 664459******************************88 PP
2	BELL	88.4	7.8e-29	267	348	1	71
BELL 1 erqelqkkkakLlsllee...........VdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdai 68 erqelq+kk+kL+++l+e V++rY+qy+ q+q+v ssFea+ag sa+ Yt+lAl++iSr+FrcL+dai Zpz_sc00425.1.g00260.1.sm.mkhc 267 ERQELQMKKSKLINMLDEsmantaglrvqVERRYRQYRGQMQAVSSSFEAAAGPSSARTYTALALRTISRQFRCLRDAI 345 79************96666666666669*********************************************** PP BELL 69 aeq 71 a q Zpz_sc00425.1.g00260.1.sm.mkhc 346 AAQ 348 987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	4.8E-52	192	347	IPR006563	POX domain
Pfam	PF07526	3.9E-46	197	346	IPR006563	POX domain
PROSITE profile	PS50071	12.034	386	449	IPR001356	Homeobox domain
CDD	cd00086	5.91E-13	389	450	No hit	No description
SMART	SM00389	2.7E-9	389	453	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.71E-17	391	455	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.5E-28	392	455	IPR009057	Homeodomain-like
Pfam	PF05920	3.8E-18	406	445	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 701 aa Download sequence Send to blast
GAGGDEREDK IHRPAQHQAC DLALKPFPDE NFSARAHIAD VSAIKMAAYY QGGAGTEIQA 60 STDGLQTLYL MNPSYAGYGD SSSTPAPGGA NMMFLNSAVS TMTPASFGVH QQSTPGVQHF 120 VGIPLQEPPS GYSLWTPAST GAAPDMSQPQ QTTPGAAGVS AVLSLSSREA PPVTVAAVAG 180 EEGKYLGASS ATSQVQMVMN SKYLKAAQEL LDEVVSVTKG AEDAKTATAK SAAAVKKKED 240 SEGVSGGGTV DGGGAKSGSA PELSTAERQE LQMKKSKLIN MLDESMANTA GLRVQVERRY 300 RQYRGQMQAV SSSFEAAAGP SSARTYTALA LRTISRQFRC LRDAIAAQDA DAAAAAGGRT 360 VGSRLRYIDH HLRQQRALQQ LGMMQGGAWR PQRGLPERSV SILRAWLFEH FLHPYPKDSD 420 KMMLAKQTGL TRSQVSNWFI NARVRLWKPM VEEMYLEETK DRDAAAGNEE GKSGGVGKSG 480 TVEDDNGGGD GTPRPDRETA KGVRVHGSSL LELAGDHQAT HAGLYGDDDE DEDGADAMQR 540 RIKKARGDEA AAAAPGSTFH HHVHEMAALH AQAAAAARQQ HEQVSHRELL MKFMESGAGA 600 RDQHQQDGRY SLFAQAAQAP YGQFSSEPFA FAGNGGVSLT LGLPHGAGAG GGAADQTASF 660 LMGGSTAGNN SVSHGAAAGG YDMNMQSTKS FAAQLMRDFV A

Sequence ? help Back to Top

Protein Sequence Length: 701 aa Download sequence Send to blast

GAGGDEREDK IHRPAQHQAC DLALKPFPDE NFSARAHIAD VSAIKMAAYY QGGAGTEIQA  60
STDGLQTLYL MNPSYAGYGD SSSTPAPGGA NMMFLNSAVS TMTPASFGVH QQSTPGVQHF  120
VGIPLQEPPS GYSLWTPAST GAAPDMSQPQ QTTPGAAGVS AVLSLSSREA PPVTVAAVAG  180
EEGKYLGASS ATSQVQMVMN SKYLKAAQEL LDEVVSVTKG AEDAKTATAK SAAAVKKKED  240
SEGVSGGGTV DGGGAKSGSA PELSTAERQE LQMKKSKLIN MLDESMANTA GLRVQVERRY  300
RQYRGQMQAV SSSFEAAAGP SSARTYTALA LRTISRQFRC LRDAIAAQDA DAAAAAGGRT  360
VGSRLRYIDH HLRQQRALQQ LGMMQGGAWR PQRGLPERSV SILRAWLFEH FLHPYPKDSD  420
KMMLAKQTGL TRSQVSNWFI NARVRLWKPM VEEMYLEETK DRDAAAGNEE GKSGGVGKSG  480
TVEDDNGGGD GTPRPDRETA KGVRVHGSSL LELAGDHQAT HAGLYGDDDE DEDGADAMQR  540
RIKKARGDEA AAAAPGSTFH HHVHEMAALH AQAAAAARQQ HEQVSHRELL MKFMESGAGA  600
RDQHQQDGRY SLFAQAAQAP YGQFSSEPFA FAGNGGVSLT LGLPHGAGAG GGAADQTASF  660
LMGGSTAGNN SVSHGAAAGG YDMNMQSTKS FAAQLMRDFV A

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5bng_A	2e-17	395	453	1	59	Homeobox protein Meis2
5bng_B	2e-17	395	453	1	59	Homeobox protein Meis2
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00425.1.g00260.1.sm.mkhc

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT086092	1e-133	BT086092.2 Zea mays full-length cDNA clone ZM_BFc0115J14 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025827941.1	0.0	BEL1-like homeodomain protein 1
Refseq	XP_025827942.1	0.0	BEL1-like homeodomain protein 1
Refseq	XP_025827943.1	0.0	BEL1-like homeodomain protein 1
Refseq	XP_025827944.1	0.0	BEL1-like homeodomain protein 1
TrEMBL	A0A1E5WEK5	0.0	A0A1E5WEK5_9POAL; BEL1-like homeodomain protein 1
STRING	Pavir.Ha01822.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4816	37	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.3	4e-67	BEL1-like homeodomain 1