PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00387.1.g00110.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 281aa    MW: 30837.5 Da    PI: 6.1634
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00387.1.g00110.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.42.9e-171461148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  rg+WT+ Ed++lv +++++G g+W t +++ g++R++k+c++rw++yl
  Zpz_sc00387.1.g00110.1.sm.mk 14 RGAWTAMEDDILVSYIRKHGEGRWGTLPSRAGLKRCGKSCRLRWLNYL 61
                                  89********************************************97 PP
2Myb_DNA-binding50.64.3e-1667111147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   rg+ + +E+el+++++++lG++ W++Ia +++ gRt++++k++w++ 
  Zpz_sc00387.1.g00110.1.sm.mk  67 RGNISNDEEELIIRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 111
                                   78899*****************.*********.************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.7E-22564IPR009057Homeodomain-like
PROSITE profilePS5129415.142961IPR017930Myb domain
SuperFamilySSF466891.72E-2712108IPR009057Homeodomain-like
SMARTSM007171.3E-131363IPR001005SANT/Myb domain
PfamPF002494.6E-151461IPR001005SANT/Myb domain
CDDcd001671.71E-101661No hitNo description
PROSITE profilePS5129424.59662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2365115IPR009057Homeodomain-like
SMARTSM007172.9E-1566114IPR001005SANT/Myb domain
PfamPF002492.8E-1467111IPR001005SANT/Myb domain
CDDcd001677.47E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006633Biological Processfatty acid biosynthetic process
GO:0006970Biological Processresponse to osmotic stress
GO:0010023Biological Processproanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MGRKPCCSKE GLNRGAWTAM EDDILVSYIR KHGEGRWGTL PSRAGLKRCG KSCRLRWLNY  60
LRPGIKRGNI SNDEEELIIR LHRLLGNRWS LIAGRLPGRT DNEIKNYWNT TLGKKARRES  120
STRSKQQHQA NAARTSSGPA RTASGAAPDA TAIGWPSPEP NTSPVRTKAL RCTARLPVPP  180
RAVAQASRGS PPEEVEAGDD HVRDAVEAAA PAAEEQQDCL PEDDLSIDLD FDLGDLAFLS  240
PWRDEAADGM VRPDDQFVGG ESDMEALLLG PAGDDLEFAW F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-251211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00387.1.g00110.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankD886191e-105D88619.1 Oryza sativa mRNA for OSMYB3, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004986909.11e-108myb-related protein 308
TrEMBLA0A1E5WBQ01e-116A0A1E5WBQ0_9POAL; Anthocyanin regulatory C1 protein
STRINGSi038905m1e-107(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.19e-53MYB family protein