PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00368.1.g00160.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 481aa    MW: 52659.4 Da    PI: 7.3107
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00368.1.g00160.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.4e-18251301155
                           AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   ++++GVr ++ +g+++AeIrd +     r  r++lg+f+taeeAak ++ a+ +l+g
  Zpz_sc00368.1.g00160.1.am.mk 251 PRFRGVRKRP-WGKYAAEIRDpW-----RrVRVWLGTFDTAEEAAKVYDSAAVQLRG 301
                                   689*******.**********88.....55************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.5E-10251301IPR001471AP2/ERF domain
CDDcd000181.77E-27251311No hitNo description
SMARTSM003807.6E-33252315IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-28252310IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-20252309IPR016177DNA-binding domain
PROSITE profilePS5103223.011252309IPR001471AP2/ERF domain
PRINTSPR003678.0E-10253264IPR001471AP2/ERF domain
PRINTSPR003678.0E-10275291IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048825Biological Processcotyledon development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MELKSKATTQ TIELLLRPSP RLVLRGGVRA REWETGQLEG AGNRPDPGNQ LERVTRGQGP  60
PAQETTRPFP DRGCHGKLPA NETARGREIT PHVTPADTWV QAHASRNQSA AAGRISRSCL  120
RVAYWWIVIL VGTTRHSHNF FRARTNEDMF AAVRRTEHVE LVTTQQRPRA AGPGPRTVRV  180
FCDDYDATDS SGDEEDHARR RVKRYVQEVR LDPTVMPAKD SSAVKAAALP STTTNSARKR  240
NADGRPGSGE PRFRGVRKRP WGKYAAEIRD PWRRVRVWLG TFDTAEEAAK VYDSAAVQLR  300
GRNATTNFQQ ASDATHPFPP QPLPAAASKN NASTSSAAAS SYDSGEESVS HGAAAAAASP  360
TSVLRSFPPS AVIALAEDVT TACMKTATIT ESTGGLFFGC PFSDDGPFGF PPVYTDFDDL  420
LRADFLPPDE PSLSLPASFF SPGDVDEERQ QSSSSAPTDK WQQVDDFFQD ITDLFQIDHQ  480
L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-18247308971Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00368.1.g00160.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7275162e-70KJ727516.1 Zea mays clone pUT5375 AP2-EREBP transcription factor (EREB96) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967470.16e-94ethylene-responsive transcription factor CRF1
TrEMBLA0A1E5VYG91e-94A0A1E5VYG9_9POAL; Uncharacterized protein
STRINGGRMZM2G142179_P013e-88(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16903697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.11e-35cytokinin response factor 4